Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0549 ATGATTGTTGAGGACCAAATTGACCGGTTTCCAGTCGGTATGAGAGTTCTTGCCGTTGACGACGACCCTACTTGCCTCAGAGTTTTAGAGACTCTGCTTCGAAAATGCCAATATCACGTGACAATAACTAACCAGGCTGTTCAAGCACTGAAAGTGTTGAGGGAAAACCGAGACAAATTTGACTTAGTCATAAGTGATGTGAACATGCCGGATATGGACGGTTTTAAGCTCCTCGAGCAAGTCGGGCTCGAAATGGACCTACCCGTTATAATGTTATCGGCTCATAGCGATACAAGGCTTGTCATGAAGGGAATCACGCATGGTGCTGTGGATTATTTACTTAAACCGGTTAGGATTGAAGAGCTTAAGAACATATGGCAACACGTGTTAAGGAAAAAGAAGTTTGACCCAAAAGATCAAAACAAGTCACCAGATAAGAGTATGAATGGCCACGGAGGAGTTAGTGGAGGAGGAGAAGGGTTTTCTTCTGTAGGGAACGAAGATAATGGGAAGGTCAATAGGAAGAGGAAGGACCAGAATGAAGATGAGGAAGAAGATGGTGATGAGAATGGACTTGAGAATGATGATCCGTCGAATCAGAAGAAGGCTCGGGTTGTTTGGTCGGTTGAGCTGCACCGGAAGTTTGTTGCAGCGGTTAATCAGTTGGGCCTTGAAACGGTTCCTAAGAAAATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTCGCGAGCCATCTGCAGAAATATAGATTGTACCTAAAGAGAATTAGTATTGTGGCGACCCAACAAGCAAACATGGTTGCCGCATTTGGGGGAAGTAAAGATGGATCGTCATACATGCGATTAGGTTCACTTGATGGATTTGGATTCACGGGATCCGGTCCAAGAATTTCAAACCCTCCATTATCATCTTCCTATTCTGGGTCCTACCCTCCTTCCGGAATCCTTAATAGATTGAACTCCCCATCCGGGTCAAGCCTACGTGGTGGTATTATCCCTTCCCACGGACTTCTCCAACAGAATATTCCCCAAAACTTGAACAACTCAATCACCTCATTCAATAAATTTCACTCTCCCGTTTTGCCCTCAAACCAAAGCTCAAACATTTTCGAAGGGATTCCAACATCCTTGGAGCTCAACCCAGTTAATGATTCAATCCCGGGGTTTTCAATGTCCAACAGTTTCATCCCGGACAATAATTCGATCTCCAGTGTTACGACTAAACCTTTGCTTTTAAGAGGAAGCAATACAAGGACAATGCCATCTTCACTTGGCAGTGGTTCATCTTCTAATTTATTAAATAATGAAAGCTGGCAAGGATCAGGGTCGATTCAACCGTCTTCGAGATTCCCTTCAAATACTTACCCATCTCATAATAATAATAATAATAATAGTCAATTACCATCAAATATTGGGTATAATAATAGCATTACGGTTGATTTCCCTTCTACAAGTGCGGTTTTAAACCCTCTAGACGACGCAGGAGGAGGTGGGCAATGCCAAGAAGACTTCATTGGTAATGTTGTATTTAGTGCCGTAAATTCTATGGGCTCTATGGGCCCTTCTTCTACCAATAATCCTATTGTGGGCTCTCTAAGCCATAGTTTGGATCAAAATAACGGGATCGGGATGGGCCCATTAAATGGGAGAGTCCCGGCATTTGGTCAAAACGGTTTCGTCAAGAAATCTCCGGAACAAACAATTATGGTTTCAAGTGGACCCAATCCCATGTATCAGACTAAGTCGCCGGATTTTTTCAGTCAAAGCAGTTACGGATCGTTGGATGATATTATGAATTCTATGATTAAACGGGAAGAAATCGAACCGATACTAATGGACGGAGGAGAGTTTGGATTTGATGCTCATTCTCTTGGGTCTTGTATATGA 1896 42.88 MIVEDQIDRFPVGMRVLAVDDDPTCLRVLETLLRKCQYHVTITNQAVQALKVLRENRDKFDLVISDVNMPDMDGFKLLEQVGLEMDLPVIMLSAHSDTRLVMKGITHGAVDYLLKPVRIEELKNIWQHVLRKKKFDPKDQNKSPDKSMNGHGGVSGGGEGFSSVGNEDNGKVNRKRKDQNEDEEEDGDENGLENDDPSNQKKARVVWSVELHRKFVAAVNQLGLETVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISIVATQQANMVAAFGGSKDGSSYMRLGSLDGFGFTGSGPRISNPPLSSSYSGSYPPSGILNRLNSPSGSSLRGGIIPSHGLLQQNIPQNLNNSITSFNKFHSPVLPSNQSSNIFEGIPTSLELNPVNDSIPGFSMSNSFIPDNNSISSVTTKPLLLRGSNTRTMPSSLGSGSSSNLLNNESWQGSGSIQPSSRFPSNTYPSHNNNNNNSQLPSNIGYNNSITVDFPSTSAVLNPLDDAGGGGQCQEDFIGNVVFSAVNSMGSMGPSSTNNPIVGSLSHSLDQNNGIGMGPLNGRVPAFGQNGFVKKSPEQTIMVSSGPNPMYQTKSPDFFSQSSYGSLDDIMNSMIKREEIEPILMDGGEFGFDAHSLGSCI 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3080122 3083472 - Conep02aG0056200.1 Cone2ag0549 433016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0549 631 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160(InterPro)
Cone2ag0549 631 MobiDBLite consensus disorder prediction 416 474 - -
Cone2ag0549 631 Gene3D - 14 157 - -
Cone2ag0549 631 SMART REC_2 14 126 IPR001789 GO:0000160(InterPro)
Cone2ag0549 631 Pfam Myb-like DNA-binding domain 204 253 IPR001005 -
Cone2ag0549 631 MobiDBLite consensus disorder prediction 134 200 - -
Cone2ag0549 631 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 254 IPR006447 GO:0003677(InterPro)
Cone2ag0549 631 SUPERFAMILY Homeodomain-like 200 258 IPR009057 -
Cone2ag0549 631 Gene3D - 198 260 - -
Cone2ag0549 631 CDD REC_typeB_ARR-like 16 130 - -
Cone2ag0549 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 357 IPR045279 GO:0009736(InterPro)
Cone2ag0549 631 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160(InterPro)
Cone2ag0549 631 SUPERFAMILY CheY-like 13 135 IPR011006 -
Cone2ag0549 631 PIRSF RR_ARR_type-B 2 631 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone2ag0549 631 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 257 IPR017930 -
Cone2ag0549 631 FunFam Two-component response regulator 198 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0334 Cone-Chr20:1496150 Cone2ag0549 Cone-Chr2:3080122 6.70E-67 dispersed
Cone2ag0549 Cone-Chr2:3080122 Cone4ag1755 Cone-Chr4:12894931 1.61E-120 dispersed
Cone16ag0459 Cone-Chr16:6854189 Cone2ag0549 Cone-Chr2:3080122 0 wgd
Cone2ag0549 Cone-Chr2:3080122 Cone4ag0611 Cone-Chr4:2810489 3.73E-136 wgd
Cone2ag0549 Cone-Chr2:3080122 Cone7ag0579 Cone-Chr7:2779087 3.60E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45712 PF13398 Peptidase_M50B 5.50E-59 CL0126 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0549 K14491 - vvi:100259369 601.282