Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone2ag0557 | ATGGCTATGCAAAAAGCTTCAGTTAAAGAACTGCAAGGGGCCAAGAAGGACTGCGGCAGCGGAGGTTTTGGTCAATTAGAAGACGAAAGTGGCTGGAGACACTGGAGAGATGGTGGAATCGGCGCTGGAGACGTTCAGATTCTGCTCACTTTGAAGGAGGATCCTGTATCCATACGCTCCCTCGGGGCTCAATACATTTCTAAACTTGTGAAAATTGGCGGTATCACTATAGCTGCTTCAAGGACTAAGGCAAAGGCAACCTATGTGACCTCGATCTGTAAGAACTGTAGAAGGACCCAGATAGTTCCATGTCGGCCCGGACTTGGGGGTGCAATTGTCCCACGCACTTGTAGCCATGTTCCTCAGGTAGGAGAGGAATCATGCTCATTGGATCCATGGATTGTGGTTCCTGACAGAAGTAGTTACATAGATCAACAAACTTTGAAGCTGCAAGAGAACCCTGAGGATGTTCCTACCGGAGAAATTCCTAGGAACATGCTTCTGTCAGTGGATCGCCATCTTGTACACACAATTCAACAAAAGTGCAGTTGCAAATTTGCAATTATACAGCCTTATATAAGGGTTGTAGGAATAGAAGATCCAAGTGAGGGGAACACTCGAGGTCCTGCTTATTTCACACAAGATGAAATAGAAGAGTTCAAAAAATTTGCTGCAGAGCCTGATGCATATAAATGCATATGCTCCAAGATTGCTCCCTCTATATTTGGCCATGATGATGTAAAGAAGGCCGTGGCCTGTCTTTTGTTTGGAGGATCAAAGAAGATTCAATTCGAATTTGCCAGATGTGTCAGGTTAAGAGGTGATATCAATGTGTTGCTTTTGGGGGACCCATCTACGGCAAAGTCTCAGTTTCTCAAGTTTGTCGAAAAAACAGCCCCTATAGCTGTGTACACTTCTGGGAAAGGCTCATCAGCTGCTGGCCTTACTGCTTCTGTGATCCAAGATAGTAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGAAGATGGGGGTGTTGTTTGCATAGATGAGTTTAACAAAATGAGACCAGAGGATAGGGTTGCTATTCATGAAGCCATGGAACAACAGACCATCTCCATTGCAAAAGCAGGAATAACGACAGTTCATAATTCCAGAACCTCAGTCCTTGCACCTGCTAACCCTCCATCAGGGCGCTATGATGATCTTAAGACTGCACAAGATAACATTGATTTGCAGACAACAATTCTTTCTCGATTCGATTTAAGCTTTATTGTCAAAGATATCAGGATGTACAGTCAGGACATGACTATAGCTAACCATGTAGTAAAACTCCATGCATCTGGTGAAGCAAACCCGGTTGAAATTCGAGTTTCTAAAGAAGAAAATTGGCTGAAAAGGCAAATGAAACCGGGAATCCATGGTGATACGAATTACTGTAAGGCAGCTGGAAGCTCTTACAAGCTACCAGCAAAGTCCGGTATAAACCAGCAAGTCAATCTTACTGGTGAGATGGGAAATGAGATAAAGAAAGCAGAAACTCAGATAAAGAGAAGAGTAGGGATCAGTAGCCACATTTCTGAGAGAAAGCTCATTGACGATCTAACCCGAATGGGATCAATGAATCCATCGTTAGGAGAGCTCTTATAA | 1638 | 43.77 | MAMQKASVKELQGAKKDCGSGGFGQLEDESGWRHWRDGGIGAGDVQILLTLKEDPVSIRSLGAQYISKLVKIGGITIAASRTKAKATYVTSICKNCRRTQIVPCRPGLGGAIVPRTCSHVPQVGEESCSLDPWIVVPDRSSYIDQQTLKLQENPEDVPTGEIPRNMLLSVDRHLVHTIQQKCSCKFAIIQPYIRVVGIEDPSEGNTRGPAYFTQDEIEEFKKFAAEPDAYKCICSKIAPSIFGHDDVKKAVACLLFGGSKKIQFEFARCVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSSREFYLEGGAMVLEDGGVVCIDEFNKMRPEDRVAIHEAMEQQTISIAKAGITTVHNSRTSVLAPANPPSGRYDDLKTAQDNIDLQTTILSRFDLSFIVKDIRMYSQDMTIANHVVKLHASGEANPVEIRVSKEENWLKRQMKPGIHGDTNYCKAAGSSYKLPAKSGINQQVNLTGEMGNEIKKAETQIKRRVGISSHISERKLIDDLTRMGSMNPSLGELL | 545 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3153268 | 3157587 | - | Conep02aG0057000.1 | Cone2ag0557 | 433024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 85 | 97 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 59 | 74 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone2ag0557 | 545 | Pfam | MCM P-loop domain | 217 | 442 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | Gene3D | - | 85 | 143 | - | - | |
| Cone2ag0557 | 545 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 54 | 448 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Cone2ag0557 | 545 | ProSiteProfiles | MCM family domain profile. | 229 | 438 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | Gene3D | - | 58 | 178 | IPR012340 | - | |
| Cone2ag0557 | 545 | Pfam | MCM OB domain | 58 | 179 | IPR033762 | - | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 273 | 288 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 412 | 420 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 333 | 347 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 385 | 397 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 361 | 374 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | Gene3D | - | 210 | 529 | IPR027417 | - | |
| Cone2ag0557 | 545 | ProSitePatterns | MCM family signature. | 341 | 349 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone2ag0557 | 545 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 239 | 446 | IPR027417 | - | |
| Cone2ag0557 | 545 | SMART | mcm | 54 | 522 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone2ag0557 | 545 | SUPERFAMILY | Nucleic acid-binding proteins | 44 | 178 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0557 | Cone-Chr2:3153268 | Cone3ag1220 | Cone-Chr3:30947681 | 9.76E-67 | dispersed | |
| Cone16ag0446 | Cone-Chr16:6781760 | Cone2ag0557 | Cone-Chr2:3153268 | 1.28E-278 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone2ag0557 | K02209 | - | gmx:100779483 | 676.396 |