Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0557 ATGGCTATGCAAAAAGCTTCAGTTAAAGAACTGCAAGGGGCCAAGAAGGACTGCGGCAGCGGAGGTTTTGGTCAATTAGAAGACGAAAGTGGCTGGAGACACTGGAGAGATGGTGGAATCGGCGCTGGAGACGTTCAGATTCTGCTCACTTTGAAGGAGGATCCTGTATCCATACGCTCCCTCGGGGCTCAATACATTTCTAAACTTGTGAAAATTGGCGGTATCACTATAGCTGCTTCAAGGACTAAGGCAAAGGCAACCTATGTGACCTCGATCTGTAAGAACTGTAGAAGGACCCAGATAGTTCCATGTCGGCCCGGACTTGGGGGTGCAATTGTCCCACGCACTTGTAGCCATGTTCCTCAGGTAGGAGAGGAATCATGCTCATTGGATCCATGGATTGTGGTTCCTGACAGAAGTAGTTACATAGATCAACAAACTTTGAAGCTGCAAGAGAACCCTGAGGATGTTCCTACCGGAGAAATTCCTAGGAACATGCTTCTGTCAGTGGATCGCCATCTTGTACACACAATTCAACAAAAGTGCAGTTGCAAATTTGCAATTATACAGCCTTATATAAGGGTTGTAGGAATAGAAGATCCAAGTGAGGGGAACACTCGAGGTCCTGCTTATTTCACACAAGATGAAATAGAAGAGTTCAAAAAATTTGCTGCAGAGCCTGATGCATATAAATGCATATGCTCCAAGATTGCTCCCTCTATATTTGGCCATGATGATGTAAAGAAGGCCGTGGCCTGTCTTTTGTTTGGAGGATCAAAGAAGATTCAATTCGAATTTGCCAGATGTGTCAGGTTAAGAGGTGATATCAATGTGTTGCTTTTGGGGGACCCATCTACGGCAAAGTCTCAGTTTCTCAAGTTTGTCGAAAAAACAGCCCCTATAGCTGTGTACACTTCTGGGAAAGGCTCATCAGCTGCTGGCCTTACTGCTTCTGTGATCCAAGATAGTAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGAAGATGGGGGTGTTGTTTGCATAGATGAGTTTAACAAAATGAGACCAGAGGATAGGGTTGCTATTCATGAAGCCATGGAACAACAGACCATCTCCATTGCAAAAGCAGGAATAACGACAGTTCATAATTCCAGAACCTCAGTCCTTGCACCTGCTAACCCTCCATCAGGGCGCTATGATGATCTTAAGACTGCACAAGATAACATTGATTTGCAGACAACAATTCTTTCTCGATTCGATTTAAGCTTTATTGTCAAAGATATCAGGATGTACAGTCAGGACATGACTATAGCTAACCATGTAGTAAAACTCCATGCATCTGGTGAAGCAAACCCGGTTGAAATTCGAGTTTCTAAAGAAGAAAATTGGCTGAAAAGGCAAATGAAACCGGGAATCCATGGTGATACGAATTACTGTAAGGCAGCTGGAAGCTCTTACAAGCTACCAGCAAAGTCCGGTATAAACCAGCAAGTCAATCTTACTGGTGAGATGGGAAATGAGATAAAGAAAGCAGAAACTCAGATAAAGAGAAGAGTAGGGATCAGTAGCCACATTTCTGAGAGAAAGCTCATTGACGATCTAACCCGAATGGGATCAATGAATCCATCGTTAGGAGAGCTCTTATAA 1638 43.77 MAMQKASVKELQGAKKDCGSGGFGQLEDESGWRHWRDGGIGAGDVQILLTLKEDPVSIRSLGAQYISKLVKIGGITIAASRTKAKATYVTSICKNCRRTQIVPCRPGLGGAIVPRTCSHVPQVGEESCSLDPWIVVPDRSSYIDQQTLKLQENPEDVPTGEIPRNMLLSVDRHLVHTIQQKCSCKFAIIQPYIRVVGIEDPSEGNTRGPAYFTQDEIEEFKKFAAEPDAYKCICSKIAPSIFGHDDVKKAVACLLFGGSKKIQFEFARCVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSSREFYLEGGAMVLEDGGVVCIDEFNKMRPEDRVAIHEAMEQQTISIAKAGITTVHNSRTSVLAPANPPSGRYDDLKTAQDNIDLQTTILSRFDLSFIVKDIRMYSQDMTIANHVVKLHASGEANPVEIRVSKEENWLKRQMKPGIHGDTNYCKAAGSSYKLPAKSGINQQVNLTGEMGNEIKKAETQIKRRVGISSHISERKLIDDLTRMGSMNPSLGELL 545
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3153268 3157587 - Conep02aG0057000.1 Cone2ag0557 433024
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 85 97 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 59 74 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone2ag0557 545 Pfam MCM P-loop domain 217 442 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 Gene3D - 85 143 - -
Cone2ag0557 545 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 54 448 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Cone2ag0557 545 ProSiteProfiles MCM family domain profile. 229 438 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 Gene3D - 58 178 IPR012340 -
Cone2ag0557 545 Pfam MCM OB domain 58 179 IPR033762 -
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein family signature 273 288 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein family signature 412 420 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein family signature 333 347 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein family signature 385 397 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 PRINTS Mini-chromosome maintenance (MCM) protein family signature 361 374 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 Gene3D - 210 529 IPR027417 -
Cone2ag0557 545 ProSitePatterns MCM family signature. 341 349 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cone2ag0557 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 446 IPR027417 -
Cone2ag0557 545 SMART mcm 54 522 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone2ag0557 545 SUPERFAMILY Nucleic acid-binding proteins 44 178 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0557 Cone-Chr2:3153268 Cone3ag1220 Cone-Chr3:30947681 9.76E-67 dispersed
Cone16ag0446 Cone-Chr16:6781760 Cone2ag0557 Cone-Chr2:3153268 1.28E-278 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0557 K02209 - gmx:100779483 676.396