Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0559 ATGGAGTTCAGCAGAATTGAAAATCTTACAAATTTGGATCTCTCGGATAACCAAATTTCTGGTCCGATTCCGGAAAACTTTGCAGAGTTGAAGAATCTTAAACTTCTCAGTCTTATGTACAACGAAATGAGTGGCTCTGTTCTAGAAGGAATTGCAGACCTTCCATCGCTTGAGACTCGTCTTATATGGAACAACATGTTTTCTGGGCCACTTCCACAAAATCTGGGCAGCAACAGAAGACTCAGGTGGGTCGATGTTTCCACAAACAATTTCAGCGGTGGGATTCCAAGGGATATCTGTTCAGGAAGAGCGTTGTTTAAGTTGATCCTGTTTTCAAATAAGTTCTCTGGTGAACTTTCACCATCTCTTGGTAATTGTTCGTCGCTTGTTCGTCTGAGAATCGAGGATAATTCATTCTCAGGTGATATCCCTTTGAAATTCAGCCATCTTCCTGATATCTCCTATGTAGACCTTTCAAAGAACAATTTTTCAGGCGGGATTCCAAGAGAAATAGGCAAAGCATCCAATCTTCAATACTTTAATATATCCAACAATCCATATTTAGGAGGTGAAGTTCCTTCAGAAACTTGGTCTCTGCCTCTTCTTCAGAACTTCTCGGCCTCTTCTTGTGGTGTAATAATATTCATCACAATATTAGCTCTAGGGGTATTCTATTTTCGAAAAGGGATTGAAGGACAATGGAAGATGGTCTCATTTACGGGCCTCCCTCGATTCATGGCCAATGATATTCTGAGGAGCTTCAGCTCTTCAGAATCCAAGAAGGGAGTGCTATCTCCTAGTTCATTTTGCAAAACAGTTCTTCCCACAGGAATAACTGTCTCAGTGAAGAAGATTGAATGGGAAACAAAGAAAATGAAGGACGTTTCAGCAGTTGTAACCCAATTAGGCAATGTGAGATATAAGAATATCAACCGATCGCTAGGGTTCTGCTACAACAAGCAGATGGGTTATCTCTTGTATGATTACTTGCCTAATGGAAATCTAGCTGAGAAAATTACAATTAAGAGGGAGTGGGAAAGCAAATACAAACTGATTACAGGCATTGCAAGGGGATTATGCTTTCTTCACCATAATTGTTACCCTGCAATTCCTCATGGGAATCTCAAGTCAAGTAATATAGTGTTTGATGAAAGTATAATCAACAACGCGATAAAGGTGGAGCTCTGCAAGGATGTTTACAGCTTCGGAGAAATTGCGCTGGAGATTTTAACTAATGGAAGGCTGCCAGCCGGAGGAACAATCTTTCAGACTAAACCAAAAGATCTTCTACTAAAAGAAATTTACAATGAAAATGAAATCACCAATTCATCCCAAGAGGAGATAAAACTGGTTCTTGAAGTTGCCTTTCCCTGCACCAAGAGTAGGCTATCTGATCGGTCATCCATGGAAGATGCATTGAAGAAGGTATTATTAGCAGCAGGAATGAAGCCACAGAAAAATTAG 1464 40.16 MEFSRIENLTNLDLSDNQISGPIPENFAELKNLKLLSLMYNEMSGSVLEGIADLPSLETRLIWNNMFSGPLPQNLGSNRRLRWVDVSTNNFSGGIPRDICSGRALFKLILFSNKFSGELSPSLGNCSSLVRLRIEDNSFSGDIPLKFSHLPDISYVDLSKNNFSGGIPREIGKASNLQYFNISNNPYLGGEVPSETWSLPLLQNFSASSCGVIIFITILALGVFYFRKGIEGQWKMVSFTGLPRFMANDILRSFSSSESKKGVLSPSSFCKTVLPTGITVSVKKIEWETKKMKDVSAVVTQLGNVRYKNINRSLGFCYNKQMGYLLYDYLPNGNLAEKITIKREWESKYKLITGIARGLCFLHHNCYPAIPHGNLKSSNIVFDESIINNAIKVELCKDVYSFGEIALEILTNGRLPAGGTIFQTKPKDLLLKEIYNENEITNSSQEEIKLVLEVAFPCTKSRLSDRSSMEDALKKVLLAAGMKPQKN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3175328 3177815 - Conep02aG0057200.1 Cone2ag0559 433026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0559 487 ProSiteProfiles Leucine-rich repeat profile. 8 31 IPR001611 GO:0005515(InterPro)
Cone2ag0559 487 SUPERFAMILY L domain-like 3 210 - -
Cone2ag0559 487 Gene3D Ribonuclease Inhibitor 1 212 IPR032675 -
Cone2ag0559 487 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 1 97 - -
Cone2ag0559 487 Gene3D Transferase(Phosphotransferase) domain 1 395 480 - -
Cone2ag0559 487 Pfam Leucine rich repeat 8 58 IPR001611 GO:0005515(InterPro)
Cone2ag0559 487 ProSiteProfiles Protein kinase domain profile. 215 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0559 487 Pfam Leucine Rich Repeat 154 173 IPR001611 GO:0005515(InterPro)
Cone2ag0559 487 Pfam Leucine Rich Repeat 80 100 IPR001611 GO:0005515(InterPro)
Cone2ag0559 487 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 209 IPR050647 -
Cone2ag0559 487 Pfam Protein kinase domain 276 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0559 487 SUPERFAMILY Protein kinase-like (PK-like) 271 476 IPR011009 -
Cone2ag0559 487 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 98 192 - -
Cone2ag0559 487 Gene3D Transferase(Phosphotransferase) domain 1 268 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0559 Cone-Chr2:3175328 Cone20ag0356 Cone-Chr20:1593832 2.30E-25 dispersed
Cone13ag0089 Cone-Chr13:556162 Cone2ag0559 Cone-Chr2:3175328 2.01E-16 wgd
Cone16ag0443 Cone-Chr16:6768456 Cone2ag0559 Cone-Chr2:3175328 2.27E-155 wgd
Cone19ag0092 Cone-Chr19:526011 Cone2ag0559 Cone-Chr2:3175328 1.49E-12 wgd
Cone19ag0902 Cone-Chr19:7030483 Cone2ag0559 Cone-Chr2:3175328 1.52E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82611 PF07714 PK_Tyr_Ser-Thr 1.60E-49 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0559 - - - 0.0