Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0572 ATGCAGCCAGTTTGTAGCAGAGAAATCCAAGCAATGAACTCTCTCTTAAACCAATTCGATCCAACCTCCTCTCATGGCGATTTCCTCGACCAGATCCTCTCCACCGTCCCTTCCTCGTCTTCTTCCTCCTGGCCGCTAGACCTCTCCGACGAAACCACGCCACCGTCTAACCACGACGACAGTCTCAACCTTCCCTATCACTTCGACGACAACTCATCAGCACTTGGCTCCACCTTGGCCACCAAGCTCCGTTCACACCACATCACCTCTGACTCCCCAGCCGCCAAGGCTGCCTCCGCGCTGATGCTTCAACACCAGCTTTTAATGTCCAGCAGAGGCCTCACCGCCTCCGTCGGAGACGGAAGTTCCGGTCTTCCTCATCTGCCTTTATCCCCATCGTTTAAATCCTGCGCTACACCAGGGGGAGGTCATGACGATTCGGTTCAAGCTCTCTACAACGGCTTCTCCGGAGCTTTACACGTGTCCGGTCAGACTCCGAATCAACAACCGCAACACTTCCAAAATCCTCAGGCACTGCTCTACGGATCAGCTCCGGAAACGACGGCTATGAATCAAACTCCGCCAAGTGGTTCTGCCGGCGGTGGCAGCTCCGAGGCGCGGCCGCGACAGAGGATCAGAGCCCGTCGAGGTCAAGCAACTGACCCACACAGCATTGCTGAGCGATTACGAAGGGAGAGAATTGCAGAGAGAATGAAATCCCTGCAAGAACTAGTCCCTAACGCCAACAAGACGGACAAGGCTTCCATGCTGGATGAAATAATTGATTATGTGAAATTCCTCCAGCTTCAAGTCAAGGTTCTAAGCATGAGCAGGTTGGGCGGTGCCGCTGCTGCTGCTGGTCATCGTGTCACTGATCAGGGTGGCGGCGACAGTGTCCAAACGGGCAATAATAACGGCACGAATACGACGTCGTCTTCTAAGGAGACGATGACGATGACGGAACATCAAGTGGCGAAGCTAATGGAGGAAGACATGGGGTCCGCCATGCAGTATTTGCAAGGGAAGGGTCTATGCCTCATGCCGATCTCACTTGCCACAGCTATCTCGACCACCACGTGTCACTCTAGGAATCCTATGATCATGAACCCTCCGAACAATAACAATCACCACCCGATGATCATGCCGTTATCCAACGGTAGTGAAGGTCCTTCCTCCCCCAGCATATCCGTCCTCACCGTCCAATCTGCTGCCAACATTAATAATATTCGCAACGGCGTAGGCGAGGGCGCTGTTAAAGATACCACTTCCGTTTCCAAGCCGTGA 1284 53.66 MQPVCSREIQAMNSLLNQFDPTSSHGDFLDQILSTVPSSSSSSWPLDLSDETTPPSNHDDSLNLPYHFDDNSSALGSTLATKLRSHHITSDSPAAKAASALMLQHQLLMSSRGLTASVGDGSSGLPHLPLSPSFKSCATPGGGHDDSVQALYNGFSGALHVSGQTPNQQPQHFQNPQALLYGSAPETTAMNQTPPSGSAGGGSSEARPRQRIRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAAAGHRVTDQGGGDSVQTGNNNGTNTTSSSKETMTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTTTCHSRNPMIMNPPNNNNHHPMIMPLSNGSEGPSSPSISVLTVQSAANINNIRNGVGEGAVKDTTSVSKP 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3296185 3298581 + Conep02aG0058500.1 Cone2ag0572 433039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0572 427 FunFam Transcription factor bHLH66 215 280 - -
Cone2ag0572 427 MobiDBLite consensus disorder prediction 37 62 - -
Cone2ag0572 427 SMART finulus 224 273 IPR011598 GO:0046983(InterPro)
Cone2ag0572 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 277 IPR036638 GO:0046983(InterPro)
Cone2ag0572 427 MobiDBLite consensus disorder prediction 186 225 - -
Cone2ag0572 427 Pfam Helix-loop-helix DNA-binding domain 223 268 IPR011598 GO:0046983(InterPro)
Cone2ag0572 427 MobiDBLite consensus disorder prediction 186 200 - -
Cone2ag0572 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983(InterPro)
Cone2ag0572 427 MobiDBLite consensus disorder prediction 294 317 - -
Cone2ag0572 427 CDD bHLH_AtbHLH_like 223 275 IPR045239 -
Cone2ag0572 427 Gene3D - 215 283 IPR036638 GO:0046983(InterPro)
Cone2ag0572 427 MobiDBLite consensus disorder prediction 288 317 - -
Cone2ag0572 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 354 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone2ag0572 427 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0572 Cone-Chr2:3296185 Cone7ag0587 Cone-Chr7:2818945 2.87E-86 dispersed
Cone13ag0099 Cone-Chr13:612715 Cone2ag0572 Cone-Chr2:3296185 4.28E-17 wgd
Cone16ag0423 Cone-Chr16:6617797 Cone2ag0572 Cone-Chr2:3296185 1.84E-204 wgd
Cone19ag0102 Cone-Chr19:583082 Cone2ag0572 Cone-Chr2:3296185 2.35E-17 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone2ag0572 Cone-Chr2:3296185 2.12E-17 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone4ag0604 Cone-Chr4:2769142 2.36E-94 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone6ag0499 Cone-Chr6:2493438 7.44E-16 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone9ag0512 Cone-Chr9:2454901 4.26E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45715 PF00642 zf-CCCH 1.40E-11 CL0537 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0572 - - - 0.0