Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0573 ATGTCCGACGGGGAAAAAGACTCCAGATCCAGTTTGCTACATGGAAAATACGAGCTCGGTAGGATTCTAGGCCATGGGACCTTCGCGAAGGTATATCATGCTAGAAACTTACAGACCGGGAAAAACGTCGCCATGAAAGTCGTCGGGAAAGAGAAGGTGATAAAGGTCGGAATGATGGAGCAGGTCAAGCGAGAAATCTCCGTCATGAAGATGTTGAAGCATCCAAACATCGTAGAACTCCATGAAGTCATGGCGAGTAAGTCGAAGATCTACCTCGCGATGGAGTTGATCAGAGGCGGTGAGCTCTTCTCCAAAATCGCGAAAGGCCGATTGAAAGAAGACCTAGCTAGAGTCTATTTCCAGCAATTGATCTCAGCCATCGATTTCTGTCACAGCCGTGGAGTCTATCACCGTGATCTGAAACCGGAAAATCTTCTCCTTGACGAAGAAGGTAATCTTAAGGTAACTGATTTTGGCCTCACTGCGTTTTCGGAGCATTTGAAACAAGACGGGTTATTACACACTACGTGTGGAACACCTGCTTATGTTGCACCTGAGGTGATTGGAAAAAAAGGTTATGATGGTGCAAAAGCTGACCTTTGGTCTTGTGGTGTAATCCTGTATGTTCTTCTTGCTGGTTTTCTTCCCTTTCAGGATGATAATTTAGTAGCCATGTATAGAAAGATTTACAGGGGAGACTTTAAATGCCCACCATGGTTCTCTTCCGAAGCTCGTAGACTAATCACCAAGCTTCTCGATCCAAATCCAAATACCCGGATTTCGATTTCGAAAATCATGGACTCCGCATGGTTTAAGAAATCCATTCCAAAAACTACAAGGGCAAAAGAAGAGCAAGAATTGGACGAAAGTTCTGAGAAATCGATGTTGAAGCAGCCCGAGACTCTAAATGCATTCCATATAATCTCTTTATCAGAAGGGTTCGATTTATCTCCCTTGTTTGAGGAGAAGAAGAGGGAAGAGAAGGAAGAGATGAGATTTGCGACCATGAAGCCAGCGAGTAGTGTGATTTCTAAGCTAGAAGAGCTTGCAAAGGCTGTGAGGTTTAATGTGAAGAAGAGTGAGTCTATAGTGAAATTGCAGGGGCAGGAGAGTGGCAGGAAAGGGAAGTTGGCGATCGGGGTGGAGATTTTCGCCCTAACGCCGTCTTTTCTGGTGGTGGAGGTGAAGAAGGACCATGGTGATACTATGGAGTATAATCAGTTCTGTAGCAAAGAGCTTAGACCTGCCCTAAAAGACATTGCTTGGACTTGTCCTGCTGGAAACACCATGCCTGGTGCTTGA 1302 45.16 MSDGEKDSRSSLLHGKYELGRILGHGTFAKVYHARNLQTGKNVAMKVVGKEKVIKVGMMEQVKREISVMKMLKHPNIVELHEVMASKSKIYLAMELIRGGELFSKIAKGRLKEDLARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADLWSCGVILYVLLAGFLPFQDDNLVAMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNTRISISKIMDSAWFKKSIPKTTRAKEEQELDESSEKSMLKQPETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATMKPASSVISKLEELAKAVRFNVKKSESIVKLQGQESGRKGKLAIGVEIFALTPSFLVVEVKKDHGDTMEYNQFCSKELRPALKDIAWTCPAGNTMPGA 433
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3318429 3320305 - Conep02aG0058600.1 Cone2ag0573 433040
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0573 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0573 433 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0573 433 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0573 433 SUPERFAMILY Protein kinase-like (PK-like) 14 292 IPR011009 -
Cone2ag0573 433 FunFam Non-specific serine/threonine protein kinase 297 422 - -
Cone2ag0573 433 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0573 433 FunFam Non-specific serine/threonine protein kinase 6 298 - -
Cone2ag0573 433 CDD STKc_SnRK3 16 270 - -
Cone2ag0573 433 Gene3D Transferase(Phosphotransferase) domain 1 99 299 - -
Cone2ag0573 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 417 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone2ag0573 433 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cone2ag0573 433 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cone2ag0573 433 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Cone2ag0573 433 CDD CIPK_C 303 418 - -
Cone2ag0573 433 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165(InterPro)
Cone2ag0573 433 Gene3D Kinase associated domain 1, KA1 300 423 - -
Cone2ag0573 433 Pfam NAF domain 299 359 IPR004041 GO:0007165(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0212 Cone-Chr1:1285445 Cone2ag0573 Cone-Chr2:3318429 3.01E-174 dispersed
Cone2ag0573 Cone-Chr2:3318429 Cone3ag0468 Cone-Chr3:2270645 1.73E-184 dispersed
Cone16ag0422 Cone-Chr16:6591522 Cone2ag0573 Cone-Chr2:3318429 1.10E-295 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82612 PF00642 zf-CCCH 1.40E-11 CL0537 Cone PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0573 - - - 0.0