Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0635 ATGGCGAGTACCAAAGTACAGAGGATTATGACCCAGCCGATTAACTTGATTTTCAGGTTCCTTCAGAGTAAAGCTCGCATTCAGATTTGGCTTTTTGAGCAGAAAGATCTGAGGATTGAAGGCCGCATTATTGGTTTTGATGAGTACATGAATTTAGTTCTTGATGACGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGAAAGTCTTTGGGGAGGATATTACTTAAAGGGGACAACATTACTTTGATGATGAATACGGGAAAATGA 267 39.7 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKSLGRILLKGDNITLMMNTGK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4119139 4122586 - Conep02aG0064900.1 Cone2ag0635 433102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0635 88 Gene3D - 1 86 - -
Cone2ag0635 88 Pfam LSM domain 19 84 IPR001163 -
Cone2ag0635 88 SMART Sm3 19 85 IPR001163 -
Cone2ag0635 88 SUPERFAMILY Sm-like ribonucleoproteins 12 85 IPR010920 -
Cone2ag0635 88 ProSiteProfiles Sm domain profile. 16 88 IPR047575 GO:0003723(InterPro)
Cone2ag0635 88 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN E 1 86 IPR027078 GO:0000387(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0034715(PANTHER)|GO:0046540(PANTHER)|GO:0071011(PANTHER)
Cone2ag0635 88 FunFam Small nuclear ribonucleoprotein E 1 87 - -
Cone2ag0635 88 CDD Sm_E 7 85 IPR027078 GO:0000398(InterPro)|GO:0005681(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0635 K11097 - - gmx:100500256 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1320 Cone-Chr18:9152965 Cone2ag0635 Cone-Chr2:4119139 2.84E-57 transposed
Cone16ag0360 Cone-Chr16:5932462 Cone2ag0635 Cone-Chr2:4119139 9.90E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0635 Cone16ag0273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001999 2 3 2 3 2 2 3 2 1 2 2 2 3 2 1 4 2 3 2 2 2 2 2 2 2 0 0 2 2 1 60