Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0645 ATGGCTCAGATTTTCGAATATTTCGTTGTGTGTGGAATCGGACCAGATGTTCGAACTCTGGATGGTAACAAGGGCTTTCATGGCTTCGGCGTTATGTACCAGGCTTCTCTGCTCGACCAGTACCCTCCTTCCAATCACTCTCTCTATCCTCCTCCACCGCCCCAACTACCTATTTGCGTACTACCAGCTGGTGTGGAGTTCTTCTCCTCCGGTTTTGAGGCCAATGATGCCTCTACGTTTCCACGGAGCTATCCCATCGTCTTGACCGAGGGCGATGGTTCAAAGATTTATGTTAGTTGCATAGCTTTCCGGGATCCTGTTTGTGAGGACATTGCTGAAGCTTACCGCATACCTCCAAACTCATTTGCTGACAAATGTATCTGTCTTGTCTCACGCTCACCCAGCTTTCGCATTCTTAAGAATGCACTAGAGGAACTATTTTCTCTATGTTTTTCCTCTAATGGATGTAGCAAGCCGTTATGGGATGTTATAGCACATATGGTCTCCAATGTACCGTTGCCTACGCTTGGAAAGGATCGTGTTCTCTTTGCAATTGAGAACTGTTTGCTTTCTGCAGAGGCTCCGCCAAAGGATGGGCTCCCCCATGCTGATATATCGTTTCAGCCTCTTGTACAATGCTTGGATTTGGATAATTTAATTAAACTTTTCACTGCTGTATTGCTTGAAAGGAGGATTCTACTACGTTCAAACAAGTATTCTCTTTTAACTCTTGCATCAGAGGCCATATGCCATTTAATATATCCATTCAGGTGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTGGACTATATCGATGCTCCGACACCTTATATGATGGGTCTCTATTCAGGTGTTGATACTTCCTTGCTGGTGATGGATGGTGTTGTTGTTGTGGACCTTGAGTTAAACCGTATCTCAACATCTGAGGAAATACCTCCCATTCCAGAACCAGAATTAAGCTCTTTGCGTAGCGAGATCATGAAGTTGTTGTGTCCCAATGTTGTAGGCATAGATCAGATGAAGGCTAATTTATGTAGCTCCTTTGATCAATTCTCTAAGTTTGCCAACAAGCCTTGGGGAGAGGACCATGACCTTCAACTCAGGTTGATATTTCTAAAATTCTTTGCTTCACTCTTAAGTGGATATCGCAATTTTATTGAAAATTCTGCAAGTCATGTCTTCAATAGTCAAGCATTTTTGAAGAAACGTTCTCGGTCTACTAATCAACCACCAGAGCCCATGATTGCTCAATTCTTAGACTCAAATGGGTTTCTAGATTATTTGGAGAGAGGATTTGGCTCTGAGGAAAACAATAATAATCTCCTTGACAAGCTACAAGATGTATTAGGAAGGGGTCAAAATCCTATTTCAATTCTTCCATCCGTTATGGAGGAGCCTGAGATCATAACTATATCTGATCCTGAAGTGGGAACGTCAGGATCTGGTGCCAAATATGCTTATGATAGGTTTCCCTCAAACATCAGAACTGATGAGCAGGAAGAGAAGAGGAAGCAGATTCTTGCAGCTGCTACTGTTGAAAAACATACTCCTAGCTATAGTGACTCAAAGGCAGAAAGTTTGGAAAGGGCTGCAGAAAGAGAGCTAATGGTTCTCGACATAAAGGTTAAGCTACAGGGCTTGTGGTTGCGGCTTCTGAAACTGGAAGCAACTGACGATCCTCTTTCATCGTTTGAATACGGCACAATACTTGCTTTAATTGAATCAGATGCTGAGGGGATTGGCGGTAGTGGGTTCGTTGAATGTATAAGGGAGCACATAAACTCGGGATGGCAATGTCAACTGACTGATGCCCAGTTTATCGCGGTAAAGGAATTGCTCAAAACAGCTATCAGTCGTGCTACTTCAAGGAATGATGTGTTGACCATTAGGGAAGCCCTTGAAGTGTCAGCTGAAATATACAAGAAAGACCCTTATAATGTTTCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGCCAAGGTTTTGGGAAGGATACTTTGACTATTTGATGGAATCCTCTTCAAATAAATCGGCCAATTATGCAACTCTGGTTTCTGCACAACTACTTTTTGTGGCATCACATATGGCTGGGCTAGGACTTCCTGACACCGATGCTTGGTACATGCTTGAAACAATTTCAGAGAAAAATAACATTGGATACAAGCAGTTTATAAAACTTAGAGGATTCTTGTCCCATGTCCAGCAACTTAGTGTTGGTTATTGGGGAGTCTCTTCTCTCAGGATCCAATCCGTTTCAGCTCACGGATTGCAATCTCCCCGTCCAAAAGATGCATCTGCTGATAATCAACTATCTGCTGAGGCTACTGGTGATGGAAGAAGCTGGGTCCAAAGCATGTTCAGCCGGGGAACAGGACCGCGAGCAAACTCTTTTGGACGTGCTCGTAGATGGACTTCTGATGGTGGTGCTTCAGGTACAAGTGAGAGTGGGAGTCCTCGTAAACAGGATTTATCTGCTGGCCAGAAGAAACTGCAAAGTAATATTCGCATACTTAGGGGTCATACAGGTGCTGTTACAGCCCTTCACTGTGTTACAAGAAGAGAGGTGTGGGACCTTGTTGGTGATCGTGAAGATGCTGGTTTCTTCATCAGTGGGAGCACAGATTGTTCGGTGAAGATCTGGGATCCCAGTCTTCGTGGTTCCGAACTTCGAGCTACTTTGATAGGGCATACAGGAGCTATCCGTGCAATTAGTTCTGACCGGGAAAAAGTGGTTTCTGGATCTGACGATCAATCTGTTATTGTATGGGACAAGCAAAGGAATCAGCTTCTGGAAGAGCTGAAAGGTCACGATGCTCAGGTCAGCTGTGTGCGTATGTTGTCAGGTGAACGTGTTCTGACAGCTGCTCATGACGGTACTGTGAAAATGTGGGATGTTAGAACTGATACTTGTGTAGCAACTGTTGGCCGCTGCTCTAGTGCAGTTCTATGCATGGAGTATGATGACTCCACTGGCATCTTGGCTGCTGCTGGTAGAGATGGGCTTGCAACCATCTGGGACATTCGTGCTGGTAGACAGATGCACAAGCTTTCAGGACACTCGAGATGGATTCGGTCAATTAGAATGGTTGGAGACACCTTGCTTACTGGTAGTGATGATTGGACTGCCCGAATGTGGTCTGTTTCCAGAGGAACATGTGAAGCTGTTCTAGCATGCCATGCTGGTCCAATTTTGTCAGTAGAATATTCCTCTCTCGAAAAAGGAGTCATAACTGGTTCAACTGATGGGCTGCTCCGGTTTTGGGAAAATGAGGATGGGGGCATAAGATGCGTAAAAAATGTTACCACTCATAATGCTGCTATATTGTCGATCAATGCTGGGGAACACTGGTTAGGAGTTGGCGCAGCAGATAATTCTATGTCTCTCTTTCATCGGCCTCAAGAGAGACTTGGTGGCTTCTCTAACACAGCTCCTCAGAAGACCGGGTGGCAACTATACAGGACACCACAAAAAACAGTTGCTATGGTAAGATGTGTGGCTTCAGACCTCGAAAGGAAAAGGATATGCAGCGGTGGGCGTAATGGGCTTCTTAGGCTATGGGAAGCCACAATAAACATCTAA 3603 44.57 MAQIFEYFVVCGIGPDVRTLDGNKGFHGFGVMYQASLLDQYPPSNHSLYPPPPPQLPICVLPAGVEFFSSGFEANDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVCEDIAEAYRIPPNSFADKCICLVSRSPSFRILKNALEELFSLCFSSNGCSKPLWDVIAHMVSNVPLPTLGKDRVLFAIENCLLSAEAPPKDGLPHADISFQPLVQCLDLDNLIKLFTAVLLERRILLRSNKYSLLTLASEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLYSGVDTSLLVMDGVVVVDLELNRISTSEEIPPIPEPELSSLRSEIMKLLCPNVVGIDQMKANLCSSFDQFSKFANKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENSASHVFNSQAFLKKRSRSTNQPPEPMIAQFLDSNGFLDYLERGFGSEENNNNLLDKLQDVLGRGQNPISILPSVMEEPEIITISDPEVGTSGSGAKYAYDRFPSNIRTDEQEEKRKQILAAATVEKHTPSYSDSKAESLERAAERELMVLDIKVKLQGLWLRLLKLEATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINSGWQCQLTDAQFIAVKELLKTAISRATSRNDVLTIREALEVSAEIYKKDPYNVSDYIQRHLISLSIWEEPRFWEGYFDYLMESSSNKSANYATLVSAQLLFVASHMAGLGLPDTDAWYMLETISEKNNIGYKQFIKLRGFLSHVQQLSVGYWGVSSLRIQSVSAHGLQSPRPKDASADNQLSAEATGDGRSWVQSMFSRGTGPRANSFGRARRWTSDGGASGTSESGSPRKQDLSAGQKKLQSNIRILRGHTGAVTALHCVTRREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLIGHTGAIRAISSDREKVVSGSDDQSVIVWDKQRNQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAAGRDGLATIWDIRAGRQMHKLSGHSRWIRSIRMVGDTLLTGSDDWTARMWSVSRGTCEAVLACHAGPILSVEYSSLEKGVITGSTDGLLRFWENEDGGIRCVKNVTTHNAAILSINAGEHWLGVGAADNSMSLFHRPQERLGGFSNTAPQKTGWQLYRTPQKTVAMVRCVASDLERKRICSGGRNGLLRLWEATINI 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31051398 31092607 + Conep02aG0165600.1 Cone2ag0645 433112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0645 1200 ProSitePatterns Trp-Asp (WD) repeats signature. 1001 1015 IPR019775 -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 889 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 CDD WD40 841 1137 - -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1064 1096 - -
Cone2ag0645 1200 SMART dDENN_cls 366 434 IPR005112 -
Cone2ag0645 1200 MobiDBLite consensus disorder prediction 763 799 - -
Cone2ag0645 1200 Gene3D - 202 387 IPR043153 -
Cone2ag0645 1200 Gene3D - 1019 1200 IPR015943 GO:0005515(InterPro)
Cone2ag0645 1200 FunFam DENN domain and WD repeat-containing protein SCD1 1 175 - -
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 977 1014 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 936 972 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 1058 1095 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 1019 1054 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 897 931 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam WD domain, G-beta repeat 841 889 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 ProSiteProfiles Tripartite DENN domain profile. 19 450 IPR037516 -
Cone2ag0645 1200 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 27 1193 IPR051696 GO:0031410(PANTHER)|GO:0032483(PANTHER)
Cone2ag0645 1200 FunFam DENN domain and WD repeat-containing protein SCD1 802 1022 - -
Cone2ag0645 1200 SUPERFAMILY WD40 repeat-like 842 1099 IPR036322 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam uDENN domain 36 103 IPR005113 -
Cone2ag0645 1200 FunFam DENN domain and WD repeat-containing protein SCD1 202 387 - -
Cone2ag0645 1200 SMART uDENN_cls 1 104 IPR005113 -
Cone2ag0645 1200 Gene3D - 1 175 - -
Cone2ag0645 1200 FunFam DENN domain and WD repeat-containing protein SCD1 1023 1200 - -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 986 1023 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 1064 1096 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 PRINTS G protein beta WD-40 repeat signature 959 973 IPR020472 -
Cone2ag0645 1200 PRINTS G protein beta WD-40 repeat signature 918 932 IPR020472 -
Cone2ag0645 1200 PRINTS G protein beta WD-40 repeat signature 1041 1055 IPR020472 -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 941 975 - -
Cone2ag0645 1200 MobiDBLite consensus disorder prediction 814 833 - -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 901 940 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 894 931 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 838 889 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 1017 1054 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 934 972 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 1101 1138 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 975 1014 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 1057 1096 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART WD40_4 1156 1195 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 901 931 - -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 941 981 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 SMART DENN_cls 122 306 IPR001194 -
Cone2ag0645 1200 Gene3D - 817 1018 IPR015943 GO:0005515(InterPro)
Cone2ag0645 1200 ProSitePatterns Trp-Asp (WD) repeats signature. 959 973 IPR019775 -
Cone2ag0645 1200 MobiDBLite consensus disorder prediction 763 833 - -
Cone2ag0645 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 1024 1063 IPR001680 GO:0005515(InterPro)
Cone2ag0645 1200 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0645 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30