Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0660 ATGAAGCCACCGGCTAACAATGCCGGAGCTGCCTCCGCCACCGTCACATCCAATCCGTGCGAAGGAATTGCAGAGAAGAAGAGCATAAACCAAGAGCTATGGCAAGCCTGTGCCGGACCACTGGTCAACTTGCCACCGGCTGGGACTCACGTCATCTATTTTCCTCAAGGTCACAGCGAGCAGGTTGCAGCGTCTATGAAGAAAGATGTGGATGCTCAAATTCCAAGCTACCCAAATCTTCCTTCAAAGCTATTATGTCTCCTTCACAATGTCACCTTGCATGCGGATCCTGAAACAGACGAAGTGTATGCTCAAATGACACTTCATCCAGTTCCTTCTTTTGACAAGGAGGCATTATTGAGATCGGATCTAGCACTTAAGTCGAATAAGCCACAACCAGAGTTCTTCTGTAAAACATTAACAGCAAGTGATACAAGCACTCATGGAGGATTCTCTGTTCCTCGTCGTGCTGCAGAGAAGATATTCCCTCCTCTTGATTTCTCCATGCAACCACCTGCTCAAGAACTTGTTGCTAGGGATTTGCAGGACAATATGTGGACTTTCCGCCATATATATCGGGGACAACCCAAGCGTCATTTGTTGACAACAGGATGGAGTCTATTTGTTAGCGGGAAGAGACTTTCCACTGGTGATTCAGTTTTGTTTATTAGAGATGAAAAGCAGCAGCTTCTTTTGGGCACTAGACGGGCAAACCGGCAACCCACCAATCTTTCATCATCGGTATTATCAAGTGACAGTATGCATATCGGGATTCTTGCAGCAGCAGCCCATGCTGCTGCAAACAATAGCCCCTTTACAGTATTCTATAATCCGAGGGCCAGTCCGTCAGAATTTGTTATCCCTTTGGCCAAGTATTACAAAGCAGTGTATGGAAACCAATTATCACTTGGCATGCGCTTTCGGATGATGTTTGAAACCGAGGAGTCTGGAACAAGAAGGTATATGGGCACTATTACAGGTATTAGTGATCTTGACCCTATTAGATGGAAAAACTCCCAGTGGCGAAACTTGCAGGTTGGGTGGGATGAGTCAACTGCAGGGGAAAGGCAGTGTAGAGTTTCAATCTGGGAGATTGAACCAGTGACTGCTCCATTTTTTATCTGCCCCCCTCCATTCCTCAGATCCAAGCATCCAAGGCAACTGGGAATGCCAGATGACGAATCTTCCGATTTAGATAACCTATTTAAGAGAACACTGCCTTGGCTCAATGATGATATCTGCATGAAGGACCCTCATGCACTTCCTGGCCTAAGCTTAGTTCAATGGATGAACATGCAGCAAAACCCTTCTCTGTCTAACCCTATTCAGCCAAATTACATACATTCCATTTCTGGGTCTTTGTTACAAAACGTTTCTGGACCACCAGACCTTTCTAGACAGTTAGGCTTCCCATCAACAACCCAAATACCCCAATCAAACAACATTCAGTTCTCATCCCAAAGACTCTCACCCCAATCTCAGCCGCTTGACCAACTCCCTAAGCTGCCTCCAAATTCTGTGAACCAATTAGGATCCATGTTACAACCACAGCAACTGTTTGGTAGTAATATTTCTCAACAGTTTAAGCAGCAAAGTGTGGTTTCTCAACAAAGCCTACCAACTTCAACTCAAATCCCGCCCCAAATACTTCAGCCCCAGAGTCTTCATGTCCAGGCTAATAATAGTAATAGTAGTAGTAATAATAATAATATTCTCCAACAGCAACAGCGATCCATTCGAAATCATCAAATCCACAGAAGCAACCTCCCTCAGAACCTGCAATTGCAGCAGCAGAAACAGCACCAACAAATCCCGAGTCAGAATCAACCACAAAACTTGATTCAATCCCATATCCCTCTAGACCAATTAAATCAGCAGTTACAAATGTCGGATAGTCAGATTCAGAGTCAACTTTTACAGAAGCTTCAGCAGCAGTCTACACTACTACAGCAATCCCAAATCCAAGATCAGCAGAGACAACAGCTGTCAGATGGGTCCCACTCCCAGAGCTTCTCCCGCCCTCTAATGCCTGCTGCTCAAATGCTCGAGAACCCTCAAGCAAGCCAGACCTTACTCCCTCGGTTGAACACATTCTCACAGCAGATATCAAAGGCTCAGGAAAATATCAGGTTTACTCATCCACCCTTGCAGACAAAGCTTCAACAAGGAAGTGGGTTGCTCACTGACATGTCTGGGCCCACGGGACATGTCAGTAGTGTAGTAGCAGGTCAGTCTGGGGTAACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTCCAAGTGTGATTCAGCCTCATCATATGAATGGTGGGAGGATTCATAGAAGTACAGGTTTTGGGGAGGACATGGCTCAATCTTCTGCCACGTTTCTTGGTCCGCATGCTTTGGAAACTATATCTTCTTCAAATCTGAATTTAGTCAAGGATTTGCAGCGCAAGGTTGAGGCTAAACCACCCATGAATATTTCCATGAATGAAAATCTAAACCAAGGAATTTTCGCCCAACAGAAATTGTTGAATAATGCAACTGGGCAGCCAGAGTTTTTGGATGCATCATCTTCAACCTCAGTTTTCTTTTCTCAGAATGATATTCGTTTGCAGCCGAACAACAACTTTTCCATGTCATTTAATCCACAATCGCTGTTGTTCAGAGATTCAAGTCGAGATTTGGAGGTTCAAGCAGATCTTCATAGTAATGATCCATATGATACTAATAATATAGATGGACAATTAGGAGCACACTTAAATCCTGACCCTTTGCTAAACAAGGGCATGGTGGGATTGGAGAAAGATTTCTCAAATAATTTTTCTTCCAATGGCTTGCTTGCAACAAGCTTTGAAAACAACAAAGATCCTCAAGCGGAACTTTCATCTGCCATGGTTACCCAATCATTTGTAGTTCCAGATATGGCATTTAATTCTGTGGATTCAACTATAAATGATAGCAGCTTCTTCCATAGAGATCCATGGGTCCCGCCCCCTCAATTTCAGCGAATGCGAACATATACCAAGGTATACAAACGTGGAGCTGTAGGTAGATCCATAGATATTGGCCGCTATTCAAATTATGATGAGCTTAAACAAGATCTGGCTCGCATGTTTGGTATAGAGGGACAGTTAGAAGACCGACAGAGAGTAGGCTGGAAACTTGTCTATGTGGATCATGAGAGTGATGTTCTACTAGTCGGAGATGACCCATGGGAGGAGTTTGTGAACTGCATACGATGCATAAAGATTCTATCACCTCAAGAAGTCCAGCAACTGAGCCTTAACGGAGATTTTGGAAACTGTGTCCTTCCAAATCAAGCATGTAGCAGTTCTGATGGCAGAAATGCTTAG 3351 44.14 MKPPANNAGAASATVTSNPCEGIAEKKSINQELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASMKKDVDAQIPSYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLHPVPSFDKEALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLQDNMWTFRHIYRGQPKRHLLTTGWSLFVSGKRLSTGDSVLFIRDEKQQLLLGTRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPIRWKNSQWRNLQVGWDESTAGERQCRVSIWEIEPVTAPFFICPPPFLRSKHPRQLGMPDDESSDLDNLFKRTLPWLNDDICMKDPHALPGLSLVQWMNMQQNPSLSNPIQPNYIHSISGSLLQNVSGPPDLSRQLGFPSTTQIPQSNNIQFSSQRLSPQSQPLDQLPKLPPNSVNQLGSMLQPQQLFGSNISQQFKQQSVVSQQSLPTSTQIPPQILQPQSLHVQANNSNSSSNNNNILQQQQRSIRNHQIHRSNLPQNLQLQQQKQHQQIPSQNQPQNLIQSHIPLDQLNQQLQMSDSQIQSQLLQKLQQQSTLLQQSQIQDQQRQQLSDGSHSQSFSRPLMPAAQMLENPQASQTLLPRLNTFSQQISKAQENIRFTHPPLQTKLQQGSGLLTDMSGPTGHVSSVVAGQSGVTDDVPSCSTSPSTNNCPSVIQPHHMNGGRIHRSTGFGEDMAQSSATFLGPHALETISSSNLNLVKDLQRKVEAKPPMNISMNENLNQGIFAQQKLLNNATGQPEFLDASSSTSVFFSQNDIRLQPNNNFSMSFNPQSLLFRDSSRDLEVQADLHSNDPYDTNNIDGQLGAHLNPDPLLNKGMVGLEKDFSNNFSSNGLLATSFENNKDPQAELSSAMVTQSFVVPDMAFNSVDSTINDSSFFHRDPWVPPPQFQRMRTYTKVYKRGAVGRSIDIGRYSNYDELKQDLARMFGIEGQLEDRQRVGWKLVYVDHESDVLLVGDDPWEEFVNCIRCIKILSPQEVQQLSLNGDFGNCVLPNQACSSSDGRNA 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31602299 31610485 - Conep02aG0167100.1 Cone2ag0660 433127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0660 1116 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 1095 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone2ag0660 1116 FunFam Auxin response factor 300 371 - -
Cone2ag0660 1116 Gene3D - 999 1093 - -
Cone2ag0660 1116 Gene3D - 300 371 - -
Cone2ag0660 1116 Pfam Auxin response factor 262 345 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone2ag0660 1116 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677(InterPro)
Cone2ag0660 1116 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677(InterPro)
Cone2ag0660 1116 CDD B3_DNA 135 227 IPR003340 GO:0003677(InterPro)
Cone2ag0660 1116 FunFam Auxin response factor 134 238 - -
Cone2ag0660 1116 SMART B3_2 136 238 IPR003340 GO:0003677(InterPro)
Cone2ag0660 1116 SUPERFAMILY DNA-binding pseudobarrel domain 125 265 IPR015300 -
Cone2ag0660 1116 MobiDBLite consensus disorder prediction 484 510 - -
Cone2ag0660 1116 ProSiteProfiles PB1 domain profile. 1004 1088 IPR053793 -
Cone2ag0660 1116 FunFam Auxin response factor 999 1093 - -
Cone2ag0660 1116 MobiDBLite consensus disorder prediction 748 767 - -
Cone2ag0660 1116 SUPERFAMILY CAD & PB1 domains 1021 1082 - -
Cone2ag0660 1116 Pfam AUX/IAA family 1002 1090 IPR033389 -
Cone2ag0660 1116 Gene3D - 134 237 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0660 Cone-Chr2:31602299 Cone4ag0837 Cone-Chr4:5421395 1.02E-278 dispersed
Cone16ag0327 Cone-Chr16:4148175 Cone2ag0660 Cone-Chr2:31602299 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45717 PF05193 Peptidase_M16_C 7.90E-38 CL0094 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0660 - - - 0.0