Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0666 ATGGACAACATCTTGGAGGAGTACAAGAATTACTGGGAAATCAACATGTTCCTTCAAACCGAAGAGCTTGACAGCTGGGCTTTGGACGAGGCCTTTTCAGGAAACTCCGATTCCAGCTCACCGGACGGAGCTGCCAGCTCATCGTCCTTGGCGGCATCGAAGAACATCGTGTCTGAGAGGAATAGAAGGAAGAAGCTGAATGACAGGCTCTTAGCCCTTAGAGCGGTTGTCCCCAAAATCAGCAAGATGGACAAGGCTTCTATAGTAAAAGATGCGATTGAGTACATTCAAGAGCTGCACGAGCAAGAGAGAAGGGTCCAAGCTGAGATCAGTGAGCTCGAGTCAGGAAAACCGGTGAAAAGTAGTATAACCGGTCATCGTTATAATATTAGTAATTATGACGTGGACAAAGAGGCCTTTCCTCATGATCTCTTCCTCAAATCAAAGAAGAAAAAAACTGATCAAGATCTTCTTCACGTGTATGATCCCCCTCATGGATCATCAAACCTAATTTCTTCCTCAATTGAACTCCTCGATCTGACAGTATCATACATGGGGGAGAAGACAATGGTAGTGAGTTTGACATGCAGTAAAAGAACCGACACGATGGTGAAACTGTGTCAAGCGTTCGAATCTTTGAAGCTCAAAATTATTACAGTCAATCTCACTTCTGTCTCCGGCAGGCTTCTGATGACGATCTTGATTGAGGCTGAGCAAGAAGAGAAAGACGATGTGAAGACTAAAATAGAGACAGCCATTGCAGCTCTGAATGATCCACAGAGCCCTATGAGCATCTAA 798 44.74 MDNILEEYKNYWEINMFLQTEELDSWALDEAFSGNSDSSSPDGAASSSSLAASKNIVSERNRRKKLNDRLLALRAVVPKISKMDKASIVKDAIEYIQELHEQERRVQAEISELESGKPVKSSITGHRYNISNYDVDKEAFPHDLFLKSKKKKTDQDLLHVYDPPHGSSNLISSSIELLDLTVSYMGEKTMVVSLTCSKRTDTMVKLCQAFESLKLKIITVNLTSVSGRLLMTILIEAEQEEKDDVKTKIETAIAALNDPQSPMSI 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31780609 31784086 + Conep02aG0167700.1 Cone2ag0666 433133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0666 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 116 IPR036638 GO:0046983(InterPro)
Cone2ag0666 265 Coils Coil 96 116 - -
Cone2ag0666 265 SMART finulus 56 105 IPR011598 GO:0046983(InterPro)
Cone2ag0666 265 Coils Coil 235 255 - -
Cone2ag0666 265 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 34 247 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone2ag0666 265 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 119 - -
Cone2ag0666 265 Gene3D - 45 116 IPR036638 GO:0046983(InterPro)
Cone2ag0666 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983(InterPro)
Cone2ag0666 265 Pfam Helix-loop-helix DNA-binding domain 56 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0666 Cone-Chr2:31780609 Cone7ag0875 Cone-Chr7:6768236 3.25E-12 dispersed
Cone16ag0322 Cone-Chr16:3960175 Cone2ag0666 Cone-Chr2:31780609 9.11E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45719 PF01501 Glyco_transf_8 6.20E-86 CL0110 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0666 - - - 0.0