Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0697 ATGTATGGAGGCGATGAGGTATCGGCCATAGTATTTGACCTTGGCTCGCACACTTGCAAAGCTGGATACGCTGGAGAAGATGCTCCTAAGGCTGTGTTTCCTTCTGTTGTTGGAGCAATCGATCGAATGGAAGTTGATGATCCTGCAACTACTGAAAATATCACTGGATCAGCTGTAGAGTCTAAAACCAATGCTATGACTGTTGACTCTGAAAAATCCAAGGGAAAACGGAAATTGTACGTAGGATCTCAAGCCTTAGGATACCGACGAGATCATATGGAGGTGCTCTTACCTTTGAAACATGGAGTTGCTATTGACTGGGATATTGTTGAAAGCATATGGGACCATGCCTTCAGGGAATGTCTGTTGGTTGATCCTAAAGAGCATCCCATGCTTCTTGCCGAGCCATCATTTAATTCTCAACAACAGAGAGAAAGGACAGCAGAGCTAATGTTTGAAAAGTACAAAGTCCCTGCTTTGTTTCTCGCCAAGAATGCTGTACTTACATCTTTTGCATCAGGCCGTGCCACTTCATTGGTCGTTGATTGTGGTGGCGGATCAACTACAGTTGCCCCAGTACATGATGGCTATGTTCTTCAAAAGGCTGTGGCATCTTCTCCTATCGGAGGAGAATTTCTCACTGATTGTCTGATGAAGAGTTTGGAGACCAAAGGTATAACGATGAAGCCCAGATATTCTTTCAAGCGACAGGAAATTCGCCCAGGGGAGTTTCAGACAGTGGACATTGATTTTCCAAATACAACAGAAAGTTATAATCTCTACTCCCAGAGGGTAATTGCTAGTGATATTAAAGAATGTGTGTGTCGTGCCCCGGATACTCCATATGATGAAAGTGCATATTCAAACATTCCAATGACCCCATACGAGCTTCCTGATGGGCAGACAATTGAAATTGGAGCTGATAGATTCAAAATTCCTGATGTTTTATTTAATCCATCCCTTGCCCAGACAATTCCTGGTATTCCAAGTTTAGCTGAAATTGCTCCTTCTGTTCGGGGATTGCCACAAATGGTCATAGAGAGCATTAACAAGTGTGATGTGGACATTCGAAAAGAGCTCTTTAGTAGTATTCTGCTTGCCGGTGGGACGGCATCAATGCAACAGTTGAAGGAACGGCTGGAGAAAGACTTACTAGAGGAATCTCCTCAGGCTGCTAGAGTTAAAGTTTTGGCAAGTGGGAATGCAACTGAAAGAAGATTCAGTGTCTGGATAGGAGGGAGTATATTAGCTTCTCTGGGCTCATTCCAGCAAATGTGGTTTTCGAAATCTGAGTATGAAGAGCACGGCGCATCTTATATTCAAAGGAAATGTCCTTGA 1338 43.5 MYGGDEVSAIVFDLGSHTCKAGYAGEDAPKAVFPSVVGAIDRMEVDDPATTENITGSAVESKTNAMTVDSEKSKGKRKLYVGSQALGYRRDHMEVLLPLKHGVAIDWDIVESIWDHAFRECLLVDPKEHPMLLAEPSFNSQQQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVASSPIGGEFLTDCLMKSLETKGITMKPRYSFKRQEIRPGEFQTVDIDFPNTTESYNLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLAQTIPGIPSLAEIAPSVRGLPQMVIESINKCDVDIRKELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32472495 32494288 + Conep02aG0171000.1 Cone2ag0697 433164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0697 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Cone2ag0697 445 CDD NBD_sugar-kinase_HSP70_actin 102 204 - -
Cone2ag0697 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Cone2ag0697 445 Gene3D - 389 445 - -
Cone2ag0697 445 FunFam Actin-related protein 4 1 183 - -
Cone2ag0697 445 Gene3D - 181 384 - -
Cone2ag0697 445 PANTHER ACTIN 8 437 IPR004000 GO:0003682(PANTHER)|GO:0006357(PANTHER)|GO:0016514(PANTHER)|GO:0035267(PANTHER)|GO:0043044(PANTHER)|GO:0043967(PANTHER)
Cone2ag0697 445 FunFam actin-related protein 4 387 445 - -
Cone2ag0697 445 Gene3D - 3 180 - -
Cone2ag0697 445 Pfam Actin 4 444 IPR004000 -
Cone2ag0697 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Cone2ag0697 445 SMART actin_3 7 445 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0697 K11340 - - vvi:100266467 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0697 Cone-Chr2:32472495 Cone3ag0092 Cone-Chr3:533119 1.33E-87 dispersed
Cone16ag0269 Cone-Chr16:3005547 Cone2ag0697 Cone-Chr2:32472495 2.41e-312 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g350 . . Bda06g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0697 . . . . . . . . . . . Bpe07g00726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00370 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33