Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0716 ATGTATGCCGGAGTGTTTTCCGGGCCTCCTTTGGCGGCGGCGGCCAACGGTGTCGGGTATGTGGGATTGAAGTCCAGCGCATCTAAACTATTCCCTCCTAGTGATTCTTTGCAGTGGAACAAGAAAACTGTCTCCAATGGTTCTAAAACTTTTTGTATGAAGACATGGAATCCAATCAATAACAAGAAGTATGAGACGCTGTCGTATTTGCCTCCTCTTTCAGAAGATTCAATTGCAAAGGAGATTGACTACATGATCAAAAAGAATTGGGTCCCTTGCCTTGAATTTGATGAGGTGGGGCATGTATATAGAGAGAATAGCCAAATGCCAGGATACTACGATGGAAGGTACTGGACCCTATGGAAGCTTCCGATGTTTGGGTGCAGTGACTCAGCTCAAGTCCTCACAGAAGTCCAAGAGTGCAGGAAAACTTACCCTAATGCTTACATCCGCCTCTTGGCCTTTGACAACATAAAACAGGGTCAGTGCATGTCCTTCATCATTCAAAAGCCGCTTTCTAATTGA 525 45.14 MYAGVFSGPPLAAAANGVGYVGLKSSASKLFPPSDSLQWNKKTVSNGSKTFCMKTWNPINNKKYETLSYLPPLSEDSIAKEIDYMIKKNWVPCLEFDEVGHVYRENSQMPGYYDGRYWTLWKLPMFGCSDSAQVLTEVQECRKTYPNAYIRLLAFDNIKQGQCMSFIIQKPLSN 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32789302 32790909 + Conep02aG0172900.1 Cone2ag0716 433183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0716 174 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 53 174 - -
Cone2ag0716 174 SUPERFAMILY RuBisCO, small subunit 53 171 IPR036385 -
Cone2ag0716 174 Gene3D Ribulose bisphosphate carboxylase, small subunit 53 174 IPR036385 -
Cone2ag0716 174 SMART RuBisCO_small_2_a 63 171 IPR000894 -
Cone2ag0716 174 Pfam Ribulose bisphosphate carboxylase, small chain 64 171 IPR000894 -
Cone2ag0716 174 CDD RuBisCO_small 62 171 IPR000894 -
Cone2ag0716 174 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 62 172 IPR000894 -
Cone2ag0716 174 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 19 171 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 13 30 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 41 59 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 111 140 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 90 105 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 145 171 IPR024681 -
Cone2ag0716 174 PRINTS RuBisCO small subunit signature 62 88 IPR024681 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0716 K01602 - - vvi:100256536 283.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0827 Cone-Chr13:7519524 Cone2ag0716 Cone-Chr2:32789302 5.13E-15 dispersed
Cone16ag0580 Cone-Chr16:7599707 Cone2ag0716 Cone-Chr2:32789302 1.52E-62 dispersed
Cone2ag0422 Cone-Chr2:2278063 Cone2ag0716 Cone-Chr2:32789302 9.25E-64 dispersed
Cone2ag0716 Cone-Chr2:32789302 Cone19ag0832 Cone-Chr19:6583918 1.37E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g324 . Blo16g00138 . . . Bpe13g00347 Bma06g00038 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 Cone16ag0580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029744 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2