Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0752 ATGGAGATTTGTCTGAACACAGATAGCGAGAAGAAATTGCGGAAAAGAAAGGCTAATAGGGATTTAGCAATGGAGAAACTGAAAGAAGGAAACGTTAATGCTGCCTCTGAGCTCTTTCAGAGGGCAGTCAATATTACTTCATCCATGGCTCATCAACTCATACAGCTTCTGAGAGAGCATAACATTGAATTTGTAGTAGCTCCATATGAAGCTGATGCACAGTTAGCATACCTCTCTGATATTGAACCAGAAAAGGGTGGAATTGCAGCTGTGATTACTGAGGATAGCGATTTAGTTGCATATGGTTGCAAAGCTGTAGTCTTTAAGATGGACCGGTATGGAAATGGTGAAGAGTTGCTACTAGAGAAGGTTTTTGATTCTTCAGATCATACACCTTCCTTCAGAAATTTTGATAAGGAATTGCTATTGGGAATGTGTGTTTTAGCTGGGTGTGATTTTCTTCCTTCCGTTCCTGGAATTGGAATTGCTAAAGCTTATGCCTTGGTTTCTAAATATCGGAAATTAGACCGTGTTCTATCTGTTTTGAAGGTTGAGAAGGGTAAGCAAATGCCGGAAGATTACTCCAAGTTCTTCAGACAAGCAGTGACAGTTTTCCAGCATGCACAAATATATGATGCTGAGACCAAAAGGCTTAAACACATGAAACCTCTTCCTCAAGAGCTTTTCCACATGCTAGGAGGAGAACTTGATTTTTTGGGACCAGAACTGCCTGCATCAATAGCTACTTCAATTGCTGAAGGAAGATTAGACCCCATAACAATGGAGGCCTTTAATAATTTCCCTTCTAGCCAATATAAAACAGAGGAGAAACCATCTTCAAATAAATACTTCAATGAAGCTTCAGCAGTGGAGAAATTGATTTTTGCATTGGGAAATCATCGTGGAGCAGTAGATAATGCAAATATTATTGAAAGACCAATATTGAAAGTGCCTGAAAACAATCCATTCAAGCGAAAGAAAGAGGAAGAAATTCACTTGGATGATTTGCACTCTGATTCTGAACACATCCAGCTCCCCAACGAGATCGAAATTATGGATGTTTTATCCATGTTTCCAGAAAAGTCTTCCGAGAAAAGGAAACTAAATAAAGATCAATTAGATGAGGAGATAGAAGAGTACATTCTTGAAGAGGTTTCAGGGTTGACTCAAGTTGAGAAATCAGAGATTGTGTGCGTGACACCGGAGTCACAGGAGAGTGTGAATTCGAAAAAGCCAGAAAGAGTCGATAATGGTAGAAAAAGAGGAGGGATGAAGAAGCAAAAGAATAGTAAAAGTAGTAGTACTATCTTGAATTTCTTCTCTAGAATCTAG 1332 39.04 MEICLNTDSEKKLRKRKANRDLAMEKLKEGNVNAASELFQRAVNITSSMAHQLIQLLREHNIEFVVAPYEADAQLAYLSDIEPEKGGIAAVITEDSDLVAYGCKAVVFKMDRYGNGEELLLEKVFDSSDHTPSFRNFDKELLLGMCVLAGCDFLPSVPGIGIAKAYALVSKYRKLDRVLSVLKVEKGKQMPEDYSKFFRQAVTVFQHAQIYDAETKRLKHMKPLPQELFHMLGGELDFLGPELPASIATSIAEGRLDPITMEAFNNFPSSQYKTEEKPSSNKYFNEASAVEKLIFALGNHRGAVDNANIIERPILKVPENNPFKRKKEEEIHLDDLHSDSEHIQLPNEIEIMDVLSMFPEKSSEKRKLNKDQLDEEIEEYILEEVSGLTQVEKSEIVCVTPESQESVNSKKPERVDNGRKRGGMKKQKNSKSSSTILNFFSRI 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33318226 33321401 + Conep02aG0176900.1 Cone2ag0752 433219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0752 443 Gene3D - 5 130 - -
Cone2ag0752 443 MobiDBLite consensus disorder prediction 400 443 - -
Cone2ag0752 443 ProSitePatterns XPG protein signature 2. 61 75 IPR019974 GO:0016788(InterPro)
Cone2ag0752 443 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 142 157 IPR006084 -
Cone2ag0752 443 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 57 74 IPR006084 -
Cone2ag0752 443 Gene3D - 135 208 - -
Cone2ag0752 443 SMART HhH_4 139 172 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cone2ag0752 443 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 11 432 IPR006084 GO:0017108(PANTHER)
Cone2ag0752 443 MobiDBLite consensus disorder prediction 407 423 - -
Cone2ag0752 443 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 138 270 IPR036279 -
Cone2ag0752 443 Pfam XPG I-region 61 152 IPR006086 GO:0004518(InterPro)
Cone2ag0752 443 CDD H3TH_FEN1-like 140 212 - -
Cone2ag0752 443 FunFam exonuclease 1 135 208 - -
Cone2ag0752 443 MobiDBLite consensus disorder prediction 428 443 - -
Cone2ag0752 443 SMART xpgineu 58 148 IPR006086 GO:0004518(InterPro)
Cone2ag0752 443 SUPERFAMILY PIN domain-like 10 152 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0752 K10746 - - cit:102616157 479.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0752 Cone-Chr2:33318226 Cone6ag0929 Cone-Chr6:4751948 1.41E-54 dispersed
Cone2ag0752 Cone-Chr2:33318226 Cone9ag0932 Cone-Chr9:4581405 1.45E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30