Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0759 ATGGTGCAATATGATTCAGCCCGATTGGCTCTCGGCTCATCGCTAGTGACCCCCACAGGCCTCGACATTGTTCAAAACCAGCCATCATCATGTCTTGCTATTATCAATAATACTACAAAAATGGGTGATTCATTTGATGAAGAGTGTGATTACCTATTCAAGGCAGTACTAATTGGTGATTCCGGAGTTGGTAAATCTAATCTTCTTTCGAGATTCTCGCGCAATGAATTCCGTCTAGATTCAAAGCCAACCATCGGCGTTGAATTTGCATACAGGAATATCAAGATTTCCGACAAGCTCATCAAAGCACAAATTTGGGATACTGCAGGACAAGAAAGGTTTAGAGCAATAACAAGTTCATACTACCGTGGTGCCTTGGGGGCGCTACTAGTTTACGATATAACGCGGAGGACATCATTCGAGAACATGAAGACTTGGTTAAGAGAGCTGAGAGACTATGGAAGTGCCGATATGGTTGTTTTCGTTATTGGGAATAAATCCGACCTGGGCCATTCGAGAGAAGTTGATGAGAATGAAGGAAAATATTTTGCAGAGCTTGAAGGTTTGTGTTTTATGGAAACTTCTGCTTTAGAGAATCAGAATGTGGAGGAAGCTTTTCTGCAAATGATCTCTAAAATCCATGAGATCACGAGTCAGAAGAAGAGCTTGGACGGTAAATTTAGTGAGAAATCAGATAGTGTTTTGCAGGGTGGGAAAGAGATAATCAACATCATTGATCATGAAAATTTGTGTAAAGCATTCTCATTCATTTACCACGTCGCAGAGGCAAGATACTTCATAATTCCCAATCAAATTTCAATATTCAACATACCTTGTACCTCATAA 846 40.31 MVQYDSARLALGSSLVTPTGLDIVQNQPSSCLAIINNTTKMGDSFDEECDYLFKAVLIGDSGVGKSNLLSRFSRNEFRLDSKPTIGVEFAYRNIKISDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRTSFENMKTWLRELRDYGSADMVVFVIGNKSDLGHSREVDENEGKYFAELEGLCFMETSALENQNVEEAFLQMISKIHEITSQKKSLDGKFSEKSDSVLQGGKEIINIIDHENLCKAFSFIYHVAEARYFIIPNQISIFNIPCTS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33396825 33400397 - Conep02aG0177600.1 Cone2ag0759 433226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0759 281 PANTHER DRAB11-RELATED 50 229 IPR050209 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005768(PANTHER)|GO:0016192(PANTHER)
Cone2ag0759 281 NCBIfam small GTP-binding protein domain 52 206 IPR005225 GO:0005525(InterPro)
Cone2ag0759 281 SMART rab_sub_5 53 216 - -
Cone2ag0759 281 FunFam ras-related protein RABA5a 45 255 - -
Cone2ag0759 281 CDD Rab11_like 50 214 - -
Cone2ag0759 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 220 IPR027417 -
Cone2ag0759 281 ProSiteProfiles small GTPase Ras family profile. 44 235 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone2ag0759 281 Gene3D - 45 240 IPR027417 -
Cone2ag0759 281 ProSiteProfiles small GTPase Rab1 family profile. 48 251 - -
Cone2ag0759 281 SMART ran_sub_2 58 250 - -
Cone2ag0759 281 Pfam Ras family 54 214 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone2ag0759 281 SMART rho_sub_3 55 216 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone2ag0759 281 PRINTS Transforming protein P21 ras signature 76 92 - -
Cone2ag0759 281 PRINTS Transforming protein P21 ras signature 156 169 - -
Cone2ag0759 281 PRINTS Transforming protein P21 ras signature 191 213 - -
Cone2ag0759 281 PRINTS Transforming protein P21 ras signature 53 74 - -
Cone2ag0759 281 PRINTS Transforming protein P21 ras signature 94 116 - -
Cone2ag0759 281 ProSiteProfiles small GTPase Rho family profile. 46 214 - -
Cone2ag0759 281 SMART ras_sub_4 50 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0759 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0759 Cone-Chr2:33396825 Cone5ag1647 Cone-Chr5:11639147 1.90E-76 dispersed
Cone9ag1233 Cone-Chr9:9005960 Cone2ag0759 Cone-Chr2:33396825 9.10E-45 dispersed
Cone16ag0345 Cone-Chr16:4481965 Cone2ag0759 Cone-Chr2:33396825 4.90E-140 transposed
Cone1ag0082 Cone-Chr1:428134 Cone2ag0759 Cone-Chr2:33396825 2.42E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012726 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28