Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0774 ATGGATGAAATAGAAATTGCAGAACTAAGGCAATTCATCAACGAATGCAAATCAAACCCTTCAATTCTCAATAACCACTCTCTTGACTTCTTCAAATCCTATCTCCTCAGCCTGGGAGCTCAAATTCCGCAAGATTCGAAAAGGGACAAGGATATGAGTAATGAAGAAGAAGATATGTGTGAGTCTGATATTGAGGTCGATAATTCTGATGTTGTGGAACCTGACAATGATCCTCCACAAAAGATGGGAAATCCTTTAGCTGAAGTAACAGAGGATAACCGTGATGCTGCACAAATAGTTAAAGCAAAAGCATTGGATGCTATATCGGAAGGTAAGCTGGATGAAGCCATAGATTATCTGACCGAAGCGATTATGTTGAATCCAACTTCAGCTATACTATATGCTAGTAGAGCTAGTGTTTTTGTCAAATTGAAGAAACCAACTGCTGCTATTCGCGATGCAGATGCTGCTTTGCAGATCAATCCTGATTCAGCAAAAGGATATAAAGTACGTGGAATGGCGAGGGCATTATTGGGAAATTGGGAAGAAGCAGCTAATGATCTCCATGTAGCATCAACGTTAGATTATGATGAGGAGATTGGTGCTGTATTAAAAAAGGTTAAAGCCAATTCCCACAAAATTGAGGTGCATCGAAAGAAATATGAACACTTGCGGAAAGAAAGGGAACAGAAAAAGGCAGAATTTGAAAAGCAACGACAAGCTGAAGCTGAAGAACGAAAGGCTGCATCTGCTTTTAAGGAAGGAGAAGTTATACCCATTCATTCAACAAGTGAACTTGAAGCTAAGTTGAATGCTGCTTCAAGGACATCTCGTACCTCTATACTTTATTTCACTGCCACATGGTGTGGTCCATGCCGTGTCATTTCTCCTCTCTATACAAGTTTGGCTGGCAAGTACCCAAAAACTGTTTTTCTAAAAGCCGATATAGATGAGGCAAAGGATGTGGCTGCTCGGTGGAATATTAGCAGTGTTCCGACCTTTTTCTTCATTAAAAATGGAAGGGAGGTTGATAAGGTGGTAGGAGCTGATAGGGGTGCACTTGAAAGGAAGATTGCCCAACATGCCGGCCCGGTTTGA 1098 41.17 MDEIEIAELRQFINECKSNPSILNNHSLDFFKSYLLSLGAQIPQDSKRDKDMSNEEEDMCESDIEVDNSDVVEPDNDPPQKMGNPLAEVTEDNRDAAQIVKAKALDAISEGKLDEAIDYLTEAIMLNPTSAILYASRASVFVKLKKPTAAIRDADAALQINPDSAKGYKVRGMARALLGNWEEAANDLHVASTLDYDEEIGAVLKKVKANSHKIEVHRKKYEHLRKEREQKKAEFEKQRQAEAEERKAASAFKEGEVIPIHSTSELEAKLNAASRTSRTSILYFTATWCGPCRVISPLYTSLAGKYPKTVFLKADIDEAKDVAARWNISSVPTFFFIKNGREVDKVVGADRGALERKIAQHAGPV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33689598 33698705 - Conep02aG0180100.1 Cone2ag0774 433241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0774 365 FunFam Hsc70-interacting protein-like protein 1 43 - -
Cone2ag0774 365 FunFam TPR repeat-containing thioredoxin TDX 232 364 - -
Cone2ag0774 365 Gene3D Glutaredoxin 232 363 - -
Cone2ag0774 365 Coils Coil 214 246 - -
Cone2ag0774 365 PANTHER HSC70-INTERACTING PROTEIN 1 362 - GO:0000118(PANTHER)|GO:0030544(PANTHER)|GO:0051085(PANTHER)
Cone2ag0774 365 FunFam FAM10 family protein 58 232 - -
Cone2ag0774 365 CDD Hip_N 6 43 IPR034649 GO:0046983(InterPro)
Cone2ag0774 365 SUPERFAMILY Thioredoxin-like 224 362 IPR036249 -
Cone2ag0774 365 ProSitePatterns Thioredoxin family active site. 281 299 IPR017937 -
Cone2ag0774 365 SUPERFAMILY TPR-like 89 198 IPR011990 GO:0005515(InterPro)
Cone2ag0774 365 Gene3D - 1 43 - -
Cone2ag0774 365 Pfam Hsp70-interacting protein N N-terminal domain 4 43 IPR034649 GO:0046983(InterPro)
Cone2ag0774 365 Pfam Thioredoxin 271 358 IPR013766 -
Cone2ag0774 365 CDD TRX_family 264 359 - -
Cone2ag0774 365 ProSiteProfiles Thioredoxin domain profile. 237 363 IPR013766 -
Cone2ag0774 365 SMART tpr_5 165 198 IPR019734 GO:0005515(InterPro)
Cone2ag0774 365 SMART tpr_5 131 164 IPR019734 GO:0005515(InterPro)
Cone2ag0774 365 SMART tpr_5 97 130 IPR019734 GO:0005515(InterPro)
Cone2ag0774 365 ProSiteProfiles TPR repeat profile. 97 130 IPR019734 GO:0005515(InterPro)
Cone2ag0774 365 Gene3D Tetratricopeptide repeat domain 57 231 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0774 K09560 - - mdm:103438090 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0157 Cone-Chr1:878329 Cone2ag0774 Cone-Chr2:33689598 2.09E-11 dispersed
Cone2ag0774 Cone-Chr2:33689598 Cone8ag0375 Cone-Chr8:2247211 8.71E-61 dispersed
Cone2ag0774 Cone-Chr2:33689598 Cone20ag0114 Cone-Chr20:506043 1.92E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g186 . . . Bda15g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0774 . . . . . . . . . . Bda14g01105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017221 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6