Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0781 ATGGCGAAGCGTCTTCTTCTTCTCCAAGCTCCGCACCTGAACTCCTCCATCCATCGGGGAACCTTCTCTCTCGTCATCTCCAGACCTAAACTGTTACTCTCTCCTCTGTCCTCCTCTCAATGCCGTCTCTCTCTGAATCCTTTCTCTCCCTCTCGGTCACATCGCAACCTCACGGTCAAAGCATTCGAAGATTCCTCCGCAGAAACTAAGGGCAAGGTGGAGGAGAAGGAGGCCAAGGTTGATGGCGAGACCGTTAGAGGTCGGGACGAGGATTTTCCAAGTGGTGAGTTTGAGTTCGAAGAATTTGGTGCTTGGAGGAGCTTTTTGGTTAAGCTTAAGATGCTCATTGCGTTTCCTTGGGAGCGAGTTCGTAAAGGCAGTGTGTTGACTATGAAATTGCGTGGCCAGGTGTCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGATTATCTCTCCCTCAAATTTGTGAGAACTTTGTAAAAGCAGCATATGATCCACGAATTGCTGGTGTTTATCTCCAAATCGAAACCTTAAATTGTGGATGGGGAAAAGTTGAAGAGATAAGAAGGCATATAGTGAATTTTAAAAAATCAGGTAAATTCGTAGTGGCTTATGTCCCTACATGTCGTGAGAAAGAATACTACCTTGCTTGTGCATGTGAAGAAATCTATGCCCCTCCAAGTGCTTACTTTTCTTTATTTGGTTTGACCGTTCAAGCATCATTCCTCAGAGGTGTTCTAGATAAAGTGGGAATCGAGCCACAGGTGCAAAGAATTGGTAAGTATAAAAGTGCTGGAGATCAACTCGCTCGCAGGACTATGTCTGAAGAAAATTGTGAGATGTTGACAGCATTACTGGATAACATCTATGGGAATTGGCTGGACACAGTTTCATCGGCAAAAGGAAAGAAAAAAGAGGATATTGAGGGTTTCATCAATGAAGGAGTTTATCAAGTTGAAAGGCTGAAAGAAGAGGGCTGGATAACAAACATACAGTATGATGATGAGGTTGTATCGATGTTGAGTAAGAGACTTGGCTTGCAAAAGGATAAGAAGCTTCCTATGGTTGATTACAGGAAGTACTCTAGAGTGAGGAAATGGACTCTGGGCTTATTAGGTGGTAGAGACCAAATTGCTGTGATTAGGGCTTCAGGGAGCATAAGCCGTATACGGAGTCCTTTCAGTTCTCCAAGTTCAGGTATTGTTGGGGAACAGCTGATTGAAAAGATTCGCAGTGTGAGAGAGTCAAAAAGATACAAGGCTGCTATCATTCGGATTGACAGTCCTGGAGGTGATGCCCTTGCTTCTGATTTAATGTGGAGGGAAATCAGACTTTTGGCTGAATCAAAACCAGTCATTGCATCCATGTCTGATGTAGCAGCAAGTGGAGGATACTACATGGCAATGGCAGCAGGGGCGATTGTTGCTGAAAACTTAACCTTGACTGGCTCGATTGGAGTCGTCACAGGGAAGTTCAACTTGGGGAAACTATATGAAAAAATTGGCTTCAACAAGGAAATTATATCGAGGGGAAAATATGCTGAAGTCGTTGCTGCTGAAAACCGATCATTCAGGCCAGAGGAAGAAGAACTTTTTGCCAAGTCTGCTCAACATGCATATAAGCAATTTCGAGACAAGGCTGCATTTTCCAGATCAATGAGTGTAGATAAGATGGAAGAAGTTGCACAAGGTCGAGTTTGGACTGGTGAAGATGCAGCTTCACATGGCCTAGTTGATGCTCTTGGAGGGTTTTCCCGAGCTGTTGCTATAGCAAAACTCAAGGCCAACATACCCCAAAATACACAGGTTAATCTGGTAGAGGTCTCAAGATCCTCCCCTACACTTCCAGAGGTTTTAAGCGGAATAGGTAGTACTATTGTCGGAGTTGAGATAACCTTGAAAGAAGTGCTACAAGACTTGGCATTTTCCGAGGGGGTTCAAGCTAGGATGGACGGAATCATGTTTCAGCAGTTAGAAGGATCTGCGTATGGTAACCCTATCTTCACTCTCATAAAAGATTACCTAAGCTCTATTTAA 2034 44.0 MAKRLLLLQAPHLNSSIHRGTFSLVISRPKLLLSPLSSSQCRLSLNPFSPSRSHRNLTVKAFEDSSAETKGKVEEKEAKVDGETVRGRDEDFPSGEFEFEEFGAWRSFLVKLKMLIAFPWERVRKGSVLTMKLRGQVSDQLKSRFSSGLSLPQICENFVKAAYDPRIAGVYLQIETLNCGWGKVEEIRRHIVNFKKSGKFVVAYVPTCREKEYYLACACEEIYAPPSAYFSLFGLTVQASFLRGVLDKVGIEPQVQRIGKYKSAGDQLARRTMSEENCEMLTALLDNIYGNWLDTVSSAKGKKKEDIEGFINEGVYQVERLKEEGWITNIQYDDEVVSMLSKRLGLQKDKKLPMVDYRKYSRVRKWTLGLLGGRDQIAVIRASGSISRIRSPFSSPSSGIVGEQLIEKIRSVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAAGAIVAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVVAAENRSFRPEEEELFAKSAQHAYKQFRDKAAFSRSMSVDKMEEVAQGRVWTGEDAASHGLVDALGGFSRAVAIAKLKANIPQNTQVNLVEVSRSSPTLPEVLSGIGSTIVGVEITLKEVLQDLAFSEGVQARMDGIMFQQLEGSAYGNPIFTLIKDYLSSI 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33800647 33808578 + Conep02aG0180800.1 Cone2ag0781 433248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0781 677 CDD S49_Sppa_N_C 376 591 IPR047272 -
Cone2ag0781 677 NCBIfam signal peptide peptidase SppA 377 590 IPR004635 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone2ag0781 677 Gene3D - 235 301 - -
Cone2ag0781 677 Gene3D - 373 523 - -
Cone2ag0781 677 Gene3D - 535 605 - -
Cone2ag0781 677 PANTHER PROTEASE 4 72 676 - -
Cone2ag0781 677 SUPERFAMILY ClpP/crotonase 372 582 IPR029045 -
Cone2ag0781 677 Pfam Peptidase family S49 194 345 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone2ag0781 677 Pfam Peptidase family S49 445 595 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone2ag0781 677 CDD S49_SppA_67K_type 129 340 IPR047217 -
Cone2ag0781 677 PIRSF Protease_4_SppA 60 676 IPR004634 GO:0006465(InterPro)|GO:0008233(InterPro)|GO:0016020(InterPro)
Cone2ag0781 677 Gene3D - 121 368 - -
Cone2ag0781 677 SUPERFAMILY ClpP/crotonase 115 331 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0781 K04773 - - csv:101211243 1016.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0253 Cone-Chr16:2763429 Cone2ag0781 Cone-Chr2:33800647 1.24E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g409 . . . . . . . . . . . . . . . . . Bhi02g00046 Tan09g1991 . . . . . . . . . . . . Cone2ag0781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32