Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0788 ATGGCGAGTGACTCAGTCAGCTCGTCCCCTTCCTCAAACAAGCGCCAAAAAGCCCTAACTCCATCAGGCTCACTCTCCAGTCTCAAATTAATCGAGGTAAACGATTACGACCTTCGAGAATCACAAGAAATTCAACAATTGATTAAGAATGATCCTTCTCAGACCTGCACAATTTGCTTTTCGGAAGATGGAAAATCAGCCAGAGGAAAACTCGATTGCTGCGACCATCACTTTTGCTTCGTCTGCATTATGGAATGGGCTAAGATCGAGTCCCGGTGCCCCTCATGTAAACGCCGGTTCTCCACCATAAGAAGACAACCGATTGACGGTTTCTTCCTCTGTGAACGGATCGTTAAGGTACCGGTTCGTGACCAGACTGAAACTCCCCATGGAAATACAGCAAGTAGACCCCATGATCCTTATGCACAAGTATGTTGTTTTGAGTGTAACGGCATGAACGATGACAGTCTTTTATTACTTTGCGATCTTTGTGATTCAGCTGCTCATACATACTGTGTCGGCCTAGGTTACACTGTACCCGAAGGTGATTGGTTTTGCCCTGATTGCACTGTAGCAAGAGCTGCACATGATGAAACTAACGAAATAAAAGCTGATATACCCATTTCTGGTATTGCCAAAGAATCAAATAATCCACTGGTCAGAAGACCTCTTTCAAAAGGTATTCCTCTTAAGAGAAGTAGCATGGCTTGTGATCAAATGGTTTCATCGGATGCAAGAACTTTGGGTCGTTGTCGTAATGTCCATAGCCACATAAGGGTGCTACGAGACAATTGGGCTTCCTTGCAAAGAGGGTCGCTGAGATTTTCTTATGGTTCATCTACTTCTTCTATTAACAGAAACTGTCAAAATGAAAGCAATAGGGCTCAAATGGATACTTCAACATCAGGAAATTGTGATCAAACGAGAAGTTCTGAGCATAATAGAAGATCAGATGATATTGACAAAGCTTGGAGGATGTTAAAACTTGCAAAGTGTATACAACCGAGGACTAACAGTGTTAATCGGGCCTCAATAAACCTTTCAGGTAAAGCTTATACTACAAAAAAAGCAAATGATGGAAGTTCAAGTTCTTATTTAGGTAAAAGTGAGAACTGTAACTCTAAGAATGTGGGAAGCACTAGTTCTACAATGGATAAGTACAAGGAATGTTCATTTAAATCTCCAAAGTTGGATAAGCAAAAGGGGACTTTAGAATCTAAAACGAGTCTTCTTACGAAATCATCAGGTTATAGTAAATCTTCTTTGACAATGAAGATCTGGAATGGTCAAGGTGGTTTATGTGGCGAAAATGAGACAAGGCTGTCCAAGAAGATTATAGATGGAGCAGGATCATCTTCCTCTGGCAAAGTAGATGTTTCACTTGGAAATTACAACTCAGGAAAAGGTTGTATTGATAGCAATGCAATGAAAGATAATGATGCAAAAAGTGAAATACAGTCCTTGGTTAAGATCAACTTGAAGCTTCTAAGCAAAGAAAAGAGTATAGATAGAGATTTGTTCAAGGAAATTGCAAGGCTATCTACTCATACTATCTTAGCTTCATGTGGATTGGAGGCCTCCAAATCGGGAATACGGACGAGCCTAAGAATTCCAAGTCCAAGATCAGTATGTAACCACACTGAGCAGGATAAGCAGCTACGCAAATCAACTCTGTTGCCTTACTGTTGCAGAAAATGTTTCTTTTTCTTTGTTAAGGAAGTGGTTAATGTTATTATGGTAGAAAAAGTAGGTTGTGCTAAAGAGGAATGA 1770 40.34 MASDSVSSSPSSNKRQKALTPSGSLSSLKLIEVNDYDLRESQEIQQLIKNDPSQTCTICFSEDGKSARGKLDCCDHHFCFVCIMEWAKIESRCPSCKRRFSTIRRQPIDGFFLCERIVKVPVRDQTETPHGNTASRPHDPYAQVCCFECNGMNDDSLLLLCDLCDSAAHTYCVGLGYTVPEGDWFCPDCTVARAAHDETNEIKADIPISGIAKESNNPLVRRPLSKGIPLKRSSMACDQMVSSDARTLGRCRNVHSHIRVLRDNWASLQRGSLRFSYGSSTSSINRNCQNESNRAQMDTSTSGNCDQTRSSEHNRRSDDIDKAWRMLKLAKCIQPRTNSVNRASINLSGKAYTTKKANDGSSSSYLGKSENCNSKNVGSTSSTMDKYKECSFKSPKLDKQKGTLESKTSLLTKSSGYSKSSLTMKIWNGQGGLCGENETRLSKKIIDGAGSSSSGKVDVSLGNYNSGKGCIDSNAMKDNDAKSEIQSLVKINLKLLSKEKSIDRDLFKEIARLSTHTILASCGLEASKSGIRTSLRIPSPRSVCNHTEQDKQLRKSTLLPYCCRKCFFFFVKEVVNVIMVEKVGCAKEE 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33874814 33877064 + Conep02aG0181500.1 Cone2ag0788 433255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0788 589 MobiDBLite consensus disorder prediction 1 21 - -
Cone2ag0788 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 209 IPR013083 -
Cone2ag0788 589 MobiDBLite consensus disorder prediction 278 308 - -
Cone2ag0788 589 Pfam PHD-finger 146 189 IPR019787 -
Cone2ag0788 589 ProSiteProfiles Zinc finger PHD-type profile. 143 192 IPR019787 -
Cone2ag0788 589 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Cone2ag0788 589 SUPERFAMILY FYVE/PHD zinc finger 131 192 IPR011011 -
Cone2ag0788 589 SMART ring_2 56 96 IPR001841 -
Cone2ag0788 589 PANTHER F18C1.6 PROTEIN 49 582 - -
Cone2ag0788 589 Pfam Ring finger domain 55 97 IPR001841 -
Cone2ag0788 589 SUPERFAMILY RING/U-box 55 104 - -
Cone2ag0788 589 MobiDBLite consensus disorder prediction 278 318 - -
Cone2ag0788 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 109 IPR013083 -
Cone2ag0788 589 SMART PHD_3 145 190 IPR001965 -
Cone2ag0788 589 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0788 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0788 Cone-Chr2:33874814 Cone3ag0824 Cone-Chr3:4231565 3.59E-43 dispersed
Cone2ag0788 Cone-Chr2:33874814 Cone10ag0802 Cone-Chr10:4073369 5.83E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45728 PF00722 Glyco_hydro_16 6.10E-41 CL0004 Cone TR