Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0792 ATGGAGTCTTGGAGTTATGTTTCTCAAGAAAAAGGGTTTATATGTGATGAGATCAATTCACCCACTAATTCACTCATTAGAAATAAATCTTCTTTACTGCCTTGGGAATCCACCATAAACAATGTTGGATTTCCAGAAATGATCGGAAAAGAATTACCCGATAATTCAATTAGTGATGTTATGAGTAGCAAGAACGCTGTGACAACTTATGGAACAAATTTTGATCCAATTCAAAGCTATAATCCTGGTGAAGATGAGTCCACTTCAAAGCTCTCATGCTTGGTAGTGGACTCATCCAACAGCCGAGATTCACTGTCCCTTATCGATCTGAAACTGGGACGGTTTGGGGATCATCGTAAGGATGCTCAAATCTTGTCGTCTGAGTCATCAACTCCACTGAAAAAGGTTCGGTGTTTAGGGGTTTATTCCAAGACGGTTTTTTGCCAAGTTTATGGTTGTAATAAGGATCTTAGCTCCTCTAAAGACTATCACAAACGGCATAAAGTTTGTGAGGTTCATTCTAAGACTGCCAAAGTTATAGTGAAGGGTACAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTTGCTGAGTTTGATGATGGTAAGCGCAGCTGCCGTAAACGGCTTGCTGGCCACAATGAACGACGTAGAAAGCCTCATGTCCTTATCCATTCCGGAAGGACTGGGAGGTTGCTTCGTTCATCTAATGGAGGCATATTTCAAGGAACTACAGTATCAAAATCATCATTTATTTGCCAAGAATTACTCTCAAGTGCCATCTGGAATGACGACTGTTATAAGCATATAAAAGTCGAGGACAACAACGATAATTACAAGTCTCTATCTGATATTCCTACAAACAATGGAACTAATCCCCTTACCGTTCCTTGCAATATGGAAACTCAATTCCCACCTTTTCATTATAACGGAGCTAGTAGTGCTTCAACCGAAAACATGTTCCATCATTTCAATGCATCATCGAATTTTCAAGTCCTTCATGGGATTCCAGACTCTATCCCTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCCTCAAATCATTCCATGGCTTGTCAACATAACAACATGGCTCAAGTTCTGGAACAAAAGCTCATGGAGGGGGTAGTAGAAAGCTCTCAGGAGGGTTTGAGTGGTGGTGGGGTGTTGAATAATAATACTAACAATAATAATTATCAGTTTGTCTTCACAGCTGAAGGTGCTAACCTCGGGAATAATAATGATGTCATCAACTTTCAACAACTTGCAGATGGGATCTTGGATTTGGAAAATGATGTCAAGGATTGTGTCTCGTATGAGACTCATCAGACCATTGACTTGCTTCAGCTTTCGTCTCCGCTTCAGAGGGTGGAGCATCATAGGCAGTCCATGTTGATTAAGGAGGAAAATCAGGCCTTTGCCTTTGTTCGGATAACCTGA 1449 40.86 MESWSYVSQEKGFICDEINSPTNSLIRNKSSLLPWESTINNVGFPEMIGKELPDNSISDVMSSKNAVTTYGTNFDPIQSYNPGEDESTSKLSCLVVDSSNSRDSLSLIDLKLGRFGDHRKDAQILSSESSTPLKKVRCLGVYSKTVFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVKGTEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPHVLIHSGRTGRLLRSSNGGIFQGTTVSKSSFICQELLSSAIWNDDCYKHIKVEDNNDNYKSLSDIPTNNGTNPLTVPCNMETQFPPFHYNGASSASTENMFHHFNASSNFQVLHGIPDSIPALSLLSSQSQNSSNHSMACQHNNMAQVLEQKLMEGVVESSQEGLSGGGVLNNNTNNNNYQFVFTAEGANLGNNNDVINFQQLADGILDLENDVKDCVSYETHQTIDLLQLSSPLQRVEHHRQSMLIKEENQAFAFVRIT 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33927478 33931980 + Conep02aG0181900.1 Cone2ag0792 433259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0792 482 FunFam Squamosa promoter-binding-like protein 14 140 209 - -
Cone2ag0792 482 Gene3D - 140 209 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone2ag0792 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 364 IPR044817 GO:0003677(InterPro)
Cone2ag0792 482 Pfam SBP domain 148 221 IPR004333 GO:0003677(InterPro)
Cone2ag0792 482 SUPERFAMILY SBT domain 146 224 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone2ag0792 482 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0792 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0772 Cone-Chr18:4379669 Cone2ag0792 Cone-Chr2:33927478 1.21E-30 dispersed
Cone2ag0792 Cone-Chr2:33927478 Cone6ag0516 Cone-Chr6:2580897 5.39E-43 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone2ag0792 Cone-Chr2:33927478 1.22E-78 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone2ag0792 Cone-Chr2:33927478 1.76E-266 wgd
Cone19ag0035 Cone-Chr19:246608 Cone2ag0792 Cone-Chr2:33927478 1.05E-84 wgd
Cone2ag0792 Cone-Chr2:33927478 Cone9ag0529 Cone-Chr9:2537830 7.35E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0792 Cone16ag0222 Cone13ag0026 Cone19ag0035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45730 PF00004 AAA 3.50E-40 CL0023 Cone TF