Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0792 ATGGAGTCTTGGAGTTATGTTTCTCAAGAAAAAGGGTTTATATGTGATGAGATCAATTCACCCACTAATTCACTCATTAGAAATAAATCTTCTTTACTGCCTTGGGAATCCACCATAAACAATGTTGGATTTCCAGAAATGATCGGAAAAGAATTACCCGATAATTCAATTAGTGATGTTATGAGTAGCAAGAACGCTGTGACAACTTATGGAACAAATTTTGATCCAATTCAAAGCTATAATCCTGGTGAAGATGAGTCCACTTCAAAGCTCTCATGCTTGGTAGTGGACTCATCCAACAGCCGAGATTCACTGTCCCTTATCGATCTGAAACTGGGACGGTTTGGGGATCATCGTAAGGATGCTCAAATCTTGTCGTCTGAGTCATCAACTCCACTGAAAAAGGTTCGGTGTTTAGGGGTTTATTCCAAGACGGTTTTTTGCCAAGTTTATGGTTGTAATAAGGATCTTAGCTCCTCTAAAGACTATCACAAACGGCATAAAGTTTGTGAGGTTCATTCTAAGACTGCCAAAGTTATAGTGAAGGGTACAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTTGCTGAGTTTGATGATGGTAAGCGCAGCTGCCGTAAACGGCTTGCTGGCCACAATGAACGACGTAGAAAGCCTCATGTCCTTATCCATTCCGGAAGGACTGGGAGGTTGCTTCGTTCATCTAATGGAGGCATATTTCAAGGAACTACAGTATCAAAATCATCATTTATTTGCCAAGAATTACTCTCAAGTGCCATCTGGAATGACGACTGTTATAAGCATATAAAAGTCGAGGACAACAACGATAATTACAAGTCTCTATCTGATATTCCTACAAACAATGGAACTAATCCCCTTACCGTTCCTTGCAATATGGAAACTCAATTCCCACCTTTTCATTATAACGGAGCTAGTAGTGCTTCAACCGAAAACATGTTCCATCATTTCAATGCATCATCGAATTTTCAAGTCCTTCATGGGATTCCAGACTCTATCCCTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCCTCAAATCATTCCATGGCTTGTCAACATAACAACATGGCTCAAGTTCTGGAACAAAAGCTCATGGAGGGGGTAGTAGAAAGCTCTCAGGAGGGTTTGAGTGGTGGTGGGGTGTTGAATAATAATACTAACAATAATAATTATCAGTTTGTCTTCACAGCTGAAGGTGCTAACCTCGGGAATAATAATGATGTCATCAACTTTCAACAACTTGCAGATGGGATCTTGGATTTGGAAAATGATGTCAAGGATTGTGTCTCGTATGAGACTCATCAGACCATTGACTTGCTTCAGCTTTCGTCTCCGCTTCAGAGGGTGGAGCATCATAGGCAGTCCATGTTGATTAAGGAGGAAAATCAGGCCTTTGCCTTTGTTCGGATAACCTGA 1449 40.86 MESWSYVSQEKGFICDEINSPTNSLIRNKSSLLPWESTINNVGFPEMIGKELPDNSISDVMSSKNAVTTYGTNFDPIQSYNPGEDESTSKLSCLVVDSSNSRDSLSLIDLKLGRFGDHRKDAQILSSESSTPLKKVRCLGVYSKTVFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVKGTEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPHVLIHSGRTGRLLRSSNGGIFQGTTVSKSSFICQELLSSAIWNDDCYKHIKVEDNNDNYKSLSDIPTNNGTNPLTVPCNMETQFPPFHYNGASSASTENMFHHFNASSNFQVLHGIPDSIPALSLLSSQSQNSSNHSMACQHNNMAQVLEQKLMEGVVESSQEGLSGGGVLNNNTNNNNYQFVFTAEGANLGNNNDVINFQQLADGILDLENDVKDCVSYETHQTIDLLQLSSPLQRVEHHRQSMLIKEENQAFAFVRIT 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33927478 33931980 + Conep02aG0181900.1 Cone2ag0792 433259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0792 482 FunFam Squamosa promoter-binding-like protein 14 140 209 - -
Cone2ag0792 482 Gene3D - 140 209 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone2ag0792 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 364 IPR044817 GO:0003677(InterPro)
Cone2ag0792 482 Pfam SBP domain 148 221 IPR004333 GO:0003677(InterPro)
Cone2ag0792 482 SUPERFAMILY SBT domain 146 224 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone2ag0792 482 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0772 Cone-Chr18:4379669 Cone2ag0792 Cone-Chr2:33927478 1.21E-30 dispersed
Cone2ag0792 Cone-Chr2:33927478 Cone6ag0516 Cone-Chr6:2580897 5.39E-43 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone2ag0792 Cone-Chr2:33927478 1.22E-78 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone2ag0792 Cone-Chr2:33927478 1.76E-266 wgd
Cone19ag0035 Cone-Chr19:246608 Cone2ag0792 Cone-Chr2:33927478 1.05E-84 wgd
Cone2ag0792 Cone-Chr2:33927478 Cone9ag0529 Cone-Chr9:2537830 7.35E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45730 PF00004 AAA 3.50E-40 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0792 - - - 0.0