Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone2ag0799 | ATGGCAAAGACAGTAACTCCTGATGGGATCTCGACGATTCTAGCAAATCCAACTACGGAATCGTTCACAGAAATTCCAGAGATCGTGGTCCAGATCCTTGATCTGAAGCCAACGGGAAATCGCTATACATTTACTGCAAATGATGGGAAGACGAAGCTCAAAGCTATTCTTCCGGCTAATCTGTCTTCTTCAGTTATATCTGGAAGTATTCAGAATCTGGGCCTTATTCAAATCCTCAATTACTCCCTCAATGACATCCCAAACAAGTCAGAAAAGTACCTTGTTGTGTTGAAATGTGAAATAGTTTCTCCTTCTCTTAAAATGGAGATAAAAAGTGATGTAAAATGTGATGAGACAGCTGAAATTTTGTTTAAGAAACCAAAACTAGAACATGAGGTAAAAGGTGAAGTGAACGTGGAAGGAGGATCTGGAATTATTTTGAAGCCAAAGCGAGAAATGGTTTCAAAATCAGCTGCTCAAATTGTTCATGAGCAGCATACGAATATGGCCCCAACTGCAAGAATGTCTATGACAAGGAGAGTTCACCCCCTTGTTTCCTTGAATCCATACCAAGGAAATTGGACTATCAAAGTTCGGGTAACAAATAAGTGCAATATGCGTACCTTTAAGAATAACAGGGGAGAAGGATGTGTCTTCAATGTGGAGTTGACAGATGAGGATGGAACACAAATTCAAGCAACAATGTTCAATGAAGCTGCACGGAAATTTTTTGACAAGTTTGAACTTGGAAAGGTCTATTACATTTCAAAGGGAACTCTAAAAGTTGCTAACAAGCAATTTAAAACAGTGCAGAATGATTATGAGATGACTCTAAACGAGAACTCTGAGGTGGAAGAGGTCTGTAATGAAGTTGCTTTTGTTCCTGACATGAAATTCAAATTTGTGCCCATTGACATGCTGGGTCCCTATGCGAATGGTAGAGAACTTGTTGATGTAATTGGAGTTGTTCAAAGTGTTTCACCTACAATGAGTATTAGGAGGAAGAGCAACAATGAAATTACATCAAAGCGGGATGTGACTATTGCTGATGAGTCGAGAAAAACAGTTGTGGTGTCTCTATGGAATGATCTTGCAACTACTTTGGGACAAGAGTTGCTTGACACAGTTGATCAATCTCCGGTAGTTGCAATCAAGTCCCTCAAAGTGGGAGACTTTCAAGGTGTTTCTTTGTCAACAGTTAGCAGGAGCACAGTTTTGGTAAATCCAGACATACCTGAAGCAAAGAAGCTGAGATCTTGGTATGATTCTGAAGGTAGAGGCACATCAATGGCTGCTGTTGGAACTGGCTTGAACTCATCTTCCAAAGGTGGAATGAGGTCTATGTATGCTGATCGGGTCCTTTTGTCTCATATACTTAATAACCCTTCCGTTGGGGAAGATAAGCCTATGTTTTTCAGCATTCGAGCATATATTAGCTTTATCAAACCTGACCAAACTATGTGGTACCGTGCTTGTAAAACTTGCAATAAGAAAGTTACTGATGCTATTGGATCTGGATATTGGTGTGAAGGCTGCCAGAATAATGTTGATGAGTGCAATTTAAGATATATACTTGTTGTAAGAGTTTCTGATTCAAGTGGTGAAGCCTATGTCTCTCTCTTCAACGAAGAAGCAGAAAACGTTATTGGTTGCTCAGCTGATGAGCTTGACAAGCTCAAATCACAGGAGGGAGAGAAGAACTTGTTTCAGCAGAAACTGAAAGAAGCTACTTGGGTTCCTCATCTGTTTCGGGTGAGTGTTTCTCAAAACGAATACAACGGGGAGAAGAGGCAGAGGATAACTGTAAAGGCTGTTGCCCCGGTTGATTTTGCTGCAGAATCAAGATTGTTGCTTGAAGAGATATCTAAGATGAGAGTTTCTAAATAG | 1887 | 40.22 | MAKTVTPDGISTILANPTTESFTEIPEIVVQILDLKPTGNRYTFTANDGKTKLKAILPANLSSSVISGSIQNLGLIQILNYSLNDIPNKSEKYLVVLKCEIVSPSLKMEIKSDVKCDETAEILFKKPKLEHEVKGEVNVEGGSGIILKPKREMVSKSAAQIVHEQHTNMAPTARMSMTRRVHPLVSLNPYQGNWTIKVRVTNKCNMRTFKNNRGEGCVFNVELTDEDGTQIQATMFNEAARKFFDKFELGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVCNEVAFVPDMKFKFVPIDMLGPYANGRELVDVIGVVQSVSPTMSIRRKSNNEITSKRDVTIADESRKTVVVSLWNDLATTLGQELLDTVDQSPVVAIKSLKVGDFQGVSLSTVSRSTVLVNPDIPEAKKLRSWYDSEGRGTSMAAVGTGLNSSSKGGMRSMYADRVLLSHILNNPSVGEDKPMFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQNNVDECNLRYILVVRVSDSSGEAYVSLFNEEAENVIGCSADELDKLKSQEGEKNLFQQKLKEATWVPHLFRVSVSQNEYNGEKRQRITVKAVAPVDFAAESRLLLEEISKMRVSK | 628 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 34010770 | 34014170 | - | Conep02aG0182700.1 | Cone2ag0799 | 433266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone2ag0799 | 628 | FunFam | Replication protein A subunit | 437 | 624 | - | - | |
| Cone2ag0799 | 628 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 105 | IPR012340 | - | |
| Cone2ag0799 | 628 | CDD | RPA1_DBD_A | 183 | 286 | - | - | |
| Cone2ag0799 | 628 | Pfam | Replication factor-A C terminal domain | 471 | 617 | IPR013955 | - | |
| Cone2ag0799 | 628 | Gene3D | - | 434 | 624 | IPR012340 | - | |
| Cone2ag0799 | 628 | Gene3D | - | 180 | 289 | IPR012340 | - | |
| Cone2ag0799 | 628 | FunFam | Replication protein A subunit | 4 | 114 | - | - | |
| Cone2ag0799 | 628 | Gene3D | - | 294 | 433 | IPR012340 | - | |
| Cone2ag0799 | 628 | Gene3D | - | 4 | 112 | IPR012340 | - | |
| Cone2ag0799 | 628 | SUPERFAMILY | Nucleic acid-binding proteins | 449 | 624 | IPR012340 | - | |
| Cone2ag0799 | 628 | CDD | RPA1_DBD_C | 464 | 623 | IPR047192 | - | |
| Cone2ag0799 | 628 | Pfam | Replication protein A OB domain | 315 | 408 | IPR031657 | - | |
| Cone2ag0799 | 628 | FunFam | Replication protein A subunit | 293 | 432 | - | - | |
| Cone2ag0799 | 628 | SUPERFAMILY | Nucleic acid-binding proteins | 299 | 426 | IPR012340 | - | |
| Cone2ag0799 | 628 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 103 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cone2ag0799 | 628 | NCBIfam | replication factor-a protein 1 (rpa1) | 5 | 623 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone2ag0799 | 628 | FunFam | Replication protein A subunit | 180 | 289 | - | - | |
| Cone2ag0799 | 628 | Pfam | OB-fold nucleic acid binding domain | 194 | 279 | IPR004365 | GO:0003676(InterPro) | |
| Cone2ag0799 | 628 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 182 | 603 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Cone2ag0799 | 628 | SUPERFAMILY | Nucleic acid-binding proteins | 181 | 289 | IPR012340 | - | |
| Cone2ag0799 | 628 | Coils | Coil | 542 | 562 | - | - | |
| Cone2ag0799 | 628 | CDD | RPA1_DBD_B | 316 | 422 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0799 | Cone-Chr2:34010770 | Cone7ag0036 | Cone-Chr7:163234 | 1.04E-94 | dispersed | |
| Cone16ag0210 | Cone-Chr16:1408756 | Cone2ag0799 | Cone-Chr2:34010770 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone2ag0799 | K07466 | - | vvi:100255412 | 964.526 |