Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0800 ATGTCAGTCGGCAAAGCGAAGCTCCTCGTCAACTTCGGAGGCGAGTTCACTCGCCAACTCGGAAAACTCAGCTACGTCGGAGGCAAAACTCGGCTCGTACTGATCGAACGGTTCGTGAGCTTCGAGGCGCTTCGAACTAAGATGACTCAACTCAGCTCGACCTTGCCGAGTTGCTTGGAGATCAGGTTCCAGCTCCCGGACGAGAGCCTGGAGTCCCGGCTCGTCTCCGTCGAGTGCGACGACGACGTATTTGCGATGATGAGCGAGTTCGAGGCCTCGCAGAGAATTCCGGTGTATATATTTGATACTAGCGCCGGCTCGGTTCAGAGGAGTGCTGGTCCTGCTGTTCCCGGAGCAGTTCTTGATCATCCAATTTCTACTCATGGAGATAACGCGGTACTAATTGATCCACTTGAGTTTGCTGATGCTGAAGATGACTTAATTTCACTTCCTAGAGTTTCAGACGATCCTCAAACTTCAACCAATAGTCATGTAAGCCCAGCAACCTCTGATTTGGTCAGTGGAACAGAGCCCCTAGCTATAGGCCAGGAATTCCCCACTGCACAAGCTTTCCGTGATGTATTAATAGCTATAGCCATTTCCCTTAAGTTTGAGTTAACATTCATAAGATCAGACCGAGCAAGAGTAACTGCCAAATGTGCTGCAGATGGCTGCTCATGGAGAGTTCATGCATCAAAACTCCCTGACATTGAAGCATTCCGGATAAAGACCTTGAAGGGAGAGCATTCTTGTACTCGGCCAGAACTGTCTAGCCATAGACAAGCAAGTATGAAATGGATCTTAAGCTGTATATTGGATCGTGTGAGGGCGAATACTAGTTACAAACCAAAGGAGATTATGAGGGATATTGAGCAAGAATATGGGGTGATGATACCGTATTTGAAAGCTCATCGAGCTAAGGAGCGTGCCCTAGAACTGATTTATAAGATGCCGATAAAGGATATTGTTAGAAGTCAAGCTGAGGTTCCTGGTGCAGAAAATGTTGCTCATAATTATGTTTCAGATCAGCAGAGAAAGAGGGTCTTGAAAGGGAGTCCAGTGCATTGCAATCTGTGTAAAAGACAGGGGCATAATAGGAGGAGTTGCTTAAAGTTTGGCCAAAATGAGAGTCGGGCTGCTGGTGATCTGAGGAAGAATTTTCATTGCATGCTTTGCAAACAAAATGGGCATAATAGGAGGACTTGCCTACACAAGTATGCGAAGTTATAA 1230 46.67 MSVGKAKLLVNFGGEFTRQLGKLSYVGGKTRLVLIERFVSFEALRTKMTQLSSTLPSCLEIRFQLPDESLESRLVSVECDDDVFAMMSEFEASQRIPVYIFDTSAGSVQRSAGPAVPGAVLDHPISTHGDNAVLIDPLEFADAEDDLISLPRVSDDPQTSTNSHVSPATSDLVSGTEPLAIGQEFPTAQAFRDVLIAIAISLKFELTFIRSDRARVTAKCAADGCSWRVHASKLPDIEAFRIKTLKGEHSCTRPELSSHRQASMKWILSCILDRVRANTSYKPKEIMRDIEQEYGVMIPYLKAHRAKERALELIYKMPIKDIVRSQAEVPGAENVAHNYVSDQQRKRVLKGSPVHCNLCKRQGHNRRSCLKFGQNESRAAGDLRKNFHCMLCKQNGHNRRTCLHKYAKL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34015139 34018117 - Conep02aG0182800.1 Cone2ag0800 433267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0800 409 SMART PB1_new 18 103 IPR000270 GO:0005515(InterPro)
Cone2ag0800 409 Pfam MuDR family transposase 180 242 IPR004332 -
Cone2ag0800 409 Pfam PB1 domain 21 96 IPR000270 GO:0005515(InterPro)
Cone2ag0800 409 MobiDBLite consensus disorder prediction 153 171 - -
Cone2ag0800 409 MobiDBLite consensus disorder prediction 151 171 - -
Cone2ag0800 409 SUPERFAMILY CAD & PB1 domains 20 95 - -
Cone2ag0800 409 PANTHER POLYPROTEIN, PUTATIVE-RELATED 176 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0800 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0800 Cone-Chr2:34015139 Cone8ag1038 Cone-Chr8:9577075 6.90E-09 dispersed
Cone2ag0800 Cone-Chr2:34015139 Cone12ag1011 Cone-Chr12:8540219 3.86E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g132 . . . . . . . . . Cmo18g00250 . . . . . Cpe09g00929 . . . . . . . . . . . . . . . Cone2ag0800 . . . . . . . . . . . . Bpe02g02335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000299 1 13 2 0 0 7 0 6 7 5 4 6 5 0 6 6 7 3 1 8 5 10 4 4 1 2 5 12 6 3 139