Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0814 ATGAATCCTGACAAGTTTACCCACAAGACAAATGAGATGCTTGCAAGTTCTCATGAACTCGCTTTCAATGCTGGTCATGCTCAGCTCGCTCCTCTCCATCTAGCTAATTCTTTAGTATCAGACCCTAATGGAGTTTTTAGTCAAGCAATAGCCAATGCTGGAGGTGAAAATGCGCCAAAGGAAGTGGAAACAGTCTTCAATCGAGCGTTGAAGAAAATCCCATCTCAATCACCTCCTCCGGATGAAATCCCAGCCAGTACATCTCTCATTAAAGTGATCCGGAGAGCTCAAGCAGCACAAAAATCTCGAGGAGACACCCATCTAGCTGTAGACCAGTTGATTCTAGGCCTTCTAGAAGATTCCCAAATTGGGGATTTGTTAAAAGAAGCTGGCATTGCTACTGCAAAAGTCAAATCGGAGGTCGAGAAGCTTCGTGGTAAAGAAGGAAAGAAGGTGGAAAGTGCTTCTGGAGACACAAATTTTCAGGCATTGAAGACATATGGTCGAGACCTTGTAGAACAAGCAGGGAAGCTTGATCCTGTCATTGGCAGAGATGAAGAAATCCGAAGAGTAGTGAGAATTTTATCAAGGAGGACTAAGAACAACCCTGTTCTGATTGGAGAGCCTGGAGTAGGAAAAACGGCTGTTGTTGAGGGATTGGCTCAAAGAATTGTAAGAGGTGATGTTCCAAGCAATCTCTCTGATGTTAGGCTCATAGCGTTGGATATGGGTGCTCTGGTTGCAGGAGCAAAGTATAGGGGAGAGTTTGAAGAGAGACTGAAGGCTGTCTTAAAGGAAGTTGAGGAAGCGGAAGGAAAGGTCATATTGTTTATTGATGAGATTCATTTAGTACTTGGAGCTGGTAGGACTGAGGGATCTATGGATGCTGCAAATCTCTTCAAACCTATGCTTGCTCGTGGTCAGCTTAGGTGCATTGGAGCAACCACTCTCGAGGAGTACAGGAAGTATGTGGAAAAGGATGCTGCATTTGAGAGAAGGTTTCAGCAGGTTTATGTGGCTGAACCTAGTGTTCCAGACACAGTTAGCATTCTTCGAGGCTTGAAAGAAAGATATGAAGGTCATCATGGTGTTAGGATACAGGATCGAGCTCTTGTTATGGCTGCTCAGCTGTCAAGCCGATATATAACTGGGCGTCATCTTCCGGACAAGGCAATTGATCTAGTTGATGAAGCCTGTGCTAACGTGAGAGTCCAGCTTGATAGCCAGCCTGAAGAAATTGATAAATTGGAGAGAAAAAGAATGCAGTTAGAAATTGAACTTCATGCACTTGAAAAGGAAAAGGACAAAGCTAGCAAAGCGCGCCTTATTGAAGTAAGAAAAGAGCTTGATGATTTAAGAGATAAGCTTCAACCCCTACTGATGAAATACCGCAAAGAGAAAGAAAGAATCGATGAGATCCGTCGGCTTAAACAGAAAAGAGAAGAGCTTCTTATTGCTTTGCAAGAGGCTGAAAGAAGATATGATTTAGCTAGAGCAGCTGATTTAAGATATGGAGCAATCCAAGATGTAGAATCTGCTATTGCACAACTTGAGGGTGGACCCACTGATGAGAACTTGATGCTGACAGAAACTGTTGGGCCTGATCAAATAGCTGAAGTGGTGAGCCGTTGGACCGGCATTCCAGTCACTAGACTGGGCCAAAATGAGAAAGAGAGGCTCATTGGGCTTGCCCAGAGGTTGCACAAGAGAGTAGTGGGCCAGGATGCAGCAGTTAACGCTGTCGCAGAGGCGGTATTGAGATCCCGGGCTGGGTTAGGGAGGCCACAACAACCAACCGGTTCATTCCTGTTTCTGGGTCCTACAGGTGTTGGTAAAACCGAGCTTGCTAAAGCTCTTGCGGAACAACTCTTTGATGATGAAAATCTTATTGTGAGGATTGACATGTCTGAGTACATGGAGCAGCACTCTGTTTCCAGGCTAATTGGTGCTCCCCCTGGGTATGTAGGACACGAGGAAGGTGGGCAACTAACTGAGGCTGTGAGGCGGAGACCTTACAGCGTTATACTTTTTGATGAAGTGGAGAAAGCACATATCTCTGTGTTTAACACTCTCCTTCAAGTATTAGACGATGGAAGATTAACTGATGGTCAAGGCCGCACAGTTGACTTCCGGAATACTGTTATTATCATGACTTCAAATCTTGGAGCAGAACATCTCCTTTCTGGGCTCATGGGAAAGTGTTCCATGGAAGCTGCCCGTGATAAAGTTCTACAAGAGGTGAGAAGGCACTTTAGGCCAGAGTTGCTAAATCGGCTTGATGAAATTGTGGTGTTTGATCCACTCTCTCATGATCAGTTGAGGAAGGTTGCTAGGTTACAAATGAAAGATGTTGCAAGCCGCCTTGCAGAAAGAGGCGTTGCATTGGCCGTGACTGATTTGGCTTTGGACTATATCTTGGCCAAAAGTTATGATCCTGTTTATGGTGCAAGACCGATAAGAAGGTGGCTTGAGAAGAGGGTGGTGACAGAGCTGTCAAGAATGCTTATAAGAGAGGAGATTGATGAGAACTCGACTGTGTATATTGATGCGGGACCAAATGGGGGTGACCTGGTTTACAGAGTGGAGAAAAATGGAGGCTTTGTTAATGCAACAACAGGCCAGAAATCAGATTTGTTGATTCAAATCCCTAATGGGGGCCAAAGAAGTGATGCTGCTCAGGCTGTCAAGAAGATGAAGATTGAAGAGGCTGAAGATGATGATGATGTAATGGACATGTAG 2739 44.91 MNPDKFTHKTNEMLASSHELAFNAGHAQLAPLHLANSLVSDPNGVFSQAIANAGGENAPKEVETVFNRALKKIPSQSPPPDEIPASTSLIKVIRRAQAAQKSRGDTHLAVDQLILGLLEDSQIGDLLKEAGIATAKVKSEVEKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLSDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKERYEGHHGVRIQDRALVMAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDKLERKRMQLEIELHALEKEKDKASKARLIEVRKELDDLRDKLQPLLMKYRKEKERIDEIRRLKQKREELLIALQEAERRYDLARAADLRYGAIQDVESAIAQLEGGPTDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAQRLHKRVVGQDAAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLIVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLMGKCSMEAARDKVLQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAERGVALAVTDLALDYILAKSYDPVYGARPIRRWLEKRVVTELSRMLIREEIDENSTVYIDAGPNGGDLVYRVEKNGGFVNATTGQKSDLLIQIPNGGQRSDAAQAVKKMKIEEAEDDDDVMDM 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34163321 34167516 - Conep02aG0184200.1 Cone2ag0814 433281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0814 912 PANTHER ATP-DEPENDENT CLP PROTEASE 4 863 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cone2ag0814 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 858 IPR027417 -
Cone2ag0814 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524(InterPro)
Cone2ag0814 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524(InterPro)
Cone2ag0814 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 602 620 IPR001270 GO:0005524(InterPro)
Cone2ag0814 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 723 IPR001270 GO:0005524(InterPro)
Cone2ag0814 912 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Cone2ag0814 912 Pfam AAA lid domain 344 442 IPR041546 -
Cone2ag0814 912 Gene3D - 551 767 IPR027417 -
Cone2ag0814 912 Pfam C-terminal, D2-small domain, of ClpB protein 768 847 IPR019489 -
Cone2ag0814 912 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524(InterPro)
Cone2ag0814 912 Gene3D - 3 148 IPR036628 -
Cone2ag0814 912 Pfam AAA domain (Cdc48 subfamily) 598 762 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0814 912 CDD AAA 182 337 - -
Cone2ag0814 912 SMART AAA_5 598 769 IPR003593 GO:0016887(InterPro)
Cone2ag0814 912 SMART AAA_5 199 344 IPR003593 GO:0016887(InterPro)
Cone2ag0814 912 FunFam ATP-dependent chaperone ClpB 1 148 - -
Cone2ag0814 912 Pfam Clp amino terminal domain, pathogenicity island component 18 56 IPR004176 -
Cone2ag0814 912 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Cone2ag0814 912 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Cone2ag0814 912 FunFam ATP-dependent Clp protease subunit 551 766 - -
Cone2ag0814 912 Coils Coil 406 440 - -
Cone2ag0814 912 Coils Coil 463 500 - -
Cone2ag0814 912 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0814 912 Gene3D - 344 545 IPR027417 -
Cone2ag0814 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 546 IPR027417 -
Cone2ag0814 912 Coils Coil 253 273 - -
Cone2ag0814 912 ProSitePatterns Chaperonins clpA/B signature 2. 632 650 IPR028299 -
Cone2ag0814 912 Gene3D - 150 343 IPR027417 -
Cone2ag0814 912 SMART ClpB_D2_small_2 768 859 IPR019489 -
Cone2ag0814 912 FunFam Chaperone clpB 1, putative 152 343 - -
Cone2ag0814 912 Gene3D - 768 866 - -
Cone2ag0814 912 CDD RecA-like_ClpB_Hsp104-like 559 765 - -
Cone2ag0814 912 FunFam ATP-dependent chaperone ClpB 344 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0814 K03695 - - csv:101221981 1591.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0200 Cone-Chr16:1324958 Cone2ag0814 Cone-Chr2:34163321 0 wgd
Cone2ag0814 Cone-Chr2:34163321 Cone4ag0511 Cone-Chr4:2279267 1.35E-284 wgd
Cone2ag0814 Cone-Chr2:34163321 Cone7ag0487 Cone-Chr7:2233664 2.81E-278 wgd
Cone2ag0814 Cone-Chr2:34163321 Cone7ag0487 Cone-Chr7:2233664 2.81E-278 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63