Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0823 ATGGAAAGAAACAAAATCATGTTAACTATCACCATGGATGAAGAAACTCGTTCACGACCGCTCTCTTCACTGATCTCCTTCTTAATCTTCGTTACAGGCAGTATTATCGTTGCCGGAGAATCTCTAGAAACAGACAGAGAGATTCTTATGAATCTTAAATCATTCCTAGAATCAAACAATAAGATAAATCGAGGAAGATACTCATCATGGAGCAAGAACAATCCAAACACATGTACGTGGGAAGGAATTTCTTGCGATCAAAACAATTCAAGAGTCACCGGAATCAACCTCGCCGGCGACCACATCTCCGGCGGGATGTTCACAAACTTCTCATCCGTAACCGAACTGACCCACCTCGACCTTTCCAGAAACACTCTTTCCGGTTCCATCCCTTATGATCTTAACTCTTGCAAAGGACTTAAACTCCTCAACCTTTCTCACAACATTCTCGAAGGGCAGCTCAATCTATCAGGTTTGATCAGTTTAGAGACTCTTGATTTGTCTGTTAATAGATTTTCGGGAGAGATTGAGTCGGTTTTTTCCCGGGAAGTTTGCGGTAGTAATTTAGTCGTTGTTAATATTTCTGGTAATAAGTTTTCGGGTAGGATTGATAGTTGTTTCGAAGAGTGCTTGAAGTTAAAGCATTTGGATTTGAGTTTAAATAAACTTACTGGGGATTTATGGTTGAATTTATGGAGGCTTGAGGAATTCTCTGTTTCTCAAAATGATTTAAATGGCTCTGTTTCTCCATTGATTTTTGAACAGAATTGTACTTTAATGGTTCTAGATCTTTCTGAAAACCATTTTTCAGGCGAATTTCCGGGGAAAATTGAGAATTGTCGAAATTTAGTGAATTTGAATTTATGGGGAAATAATTTTACGGGTTTGATTCCGTCCGAGATCGGCTCGATTTCGGGTCTAGAATCTTTGTTTTTGGGTAGAAACAAATTCTCTAGAGAGATTCCTCAATCCCTTGTGAGTTTGGAAAAATTGGTTTTCTTGGATTTGAGTAGGATCAAATTCGGAGGAGATGTACAAGAAATTTTCGGTAAATTTACGCAAGTAAAGAGTCTTGGTTTGCACGGGAATTTGTACACCGGAGGGCTAGTTTCGTCTGGAATTCTCACTTTACCTAACATTTCCCGGTTAGATATAAGCATCAACAACTTTTCGGGCCCGCTACCCGTAGAACTTTCCGGAATGATGAATTTGGAGTACTTATTTCTCGCCTGCAATCAGTTCACCGGGAATATTCCATCCGAAATTGGACTCTTGCGGAATCTTCAAGCCCTCGATCTATCATACAACAACCTAACTGGGTCAATCCCGACCACATTTGGAAAGCTGACTTCTCTCTTATGGCTTATGCTAGCAAATAATAAGCTTACAGGTGAAATCCCATCTGAGTTAGGAAATTGTTCTAGCTTGTTATGGCTTAACCTTGCAGATAATCAATTTTCCGGGAAAATCCCCTCTGAGTTGACAAGTATAGGAGTGAACTCCATGGCTACATTTGAAGCGAATCGCCAGAAAGAGACGGTTATTGCTAGTTCAGGTGAATGCTTGGCAATGAAAAGGTGGATTCCCGCCAATTACCCTCCTTTTAGCTTTGTCTACTCAATCCTTACAACGAAGAGTTGTAGAAGCATATGGAATAGCTTACTTTTAGGGTACGGGATTTTCCCGATTTGTCAAAAAGATTCCGGGGTACGGAATTTGCAAATTTCCGGGTATATTCAATTGAGTGGAAATCAGCTTTCGGGCGAGGTTACTTCTGATGTAAGCAAGATGCAAAATTTCAGTATGCTTAGTTTGGGTTCTAATAGGTTATCCGGGAAGCTCCCTCCAGAAATTTCTCAGTTGCCGCTTGTCGTTCTAAACATCTCGAAAAATAATTTTTCAGGTGAGATACCGGTGGAAATCGGAAACATGAAGTGCTTACAGAATCTTGATTTGTCTTACAATAACTTCTCTGGGATTTTCCCAACAAGTTTGAACAAGTTGACCGAGCTAAACAAGTTCAATATCTCGTACAATCCGCTCATTTCGGGTTTTGTTCCTTCTACCGGACAATTATCAACTTTCGAGAAAGATTCTTACCTTGGAGACCTTTTGTTGCGTCTTCCGAATTTCTTGAACATTACTCCATCAGAGTCATCTTCCGATAATTCAAGATTTCACAGGATGAGAAATACTAAACTAGCCGGAGTTTTGGAGTTCTTGGGTATAACCCTTGCCATCTTCATTTGTGGAGTTTTAGCATTCATAGTTTGCTCATTAGCAAAAAACCCATCAAACCAATTAAACGAAGATTTCGCCTCAAATTCAGTTAAGATCGTCCGCTTGGACAAAACCTCGTTCACAGAGGACGACATTTTGAAAGCCACTGCAAATTTTTCTGAGGAGAGAATTATCGGGAAAGGAGGTTTTGGGATGGTTTACAAGGGAGTACTACAAGACGGGAGACAAATAGCTGTAAAGAAGTTGGTTAGAGAAGGTATTGAAGGTGAGAAAGAGTTTCAAGCTGAAATGGAAGTTCTTAGCAAAGGGTGGCCCCATCCAAACCTCGTAACGCTTTACGGATGGTGTCTAAATGGTTCTGAGAAAATATTAGTTTACGAGTTCATGGAAGGCGGGACTTTGGAAGATCTCATATTGGACCGAGTCCAGTTAACATCTCAAAGACGGATGGAAGTAATAACAGACATAGCACGGGCTCTTGTTTTTCTCCACCACAATTGTTTCCCGGCAATTGTTCATAGAGACGTGAAAGCTGGAAATGTGCTTCTAGATAAAACCGGGAAAGCGAGAGTAACCGATTTCGGTTTGGCTCGGGTAGTTGATGTTGGGGAAAGCCATGTTAGCACAATGGTGGCAGGAACAATCGGTTATGTTGCCCCGGAGTATGGGCAGACATGGAAAGCTACCACGAAAGGTGATGTTTACAGTTTTGGAGTGCTTGCTATGGAGTTAGCTATGGCCCGGAGGGCTTTGGATGGAGGGGACGAGTGCTTGGTTGACTGGGCTAGAAGGGTGATTGGTTCAGACCAGGAAGTCAAACTAGGCTTAGTTTTTGGGTCGGGCTTCGAGGATGGTTTGGAGGAGATGTTAGAGTTGCTTCAGGTCGGGTTGTGGTGCACGGCTGAGTCTCCGAGGGATAGACCGAGCATGCAGGATGTGCTAGATATGTTGACTAAGATTTCTTCTTCTAAGTTAAGAAAGTGA 3225 41.64 MERNKIMLTITMDEETRSRPLSSLISFLIFVTGSIIVAGESLETDREILMNLKSFLESNNKINRGRYSSWSKNNPNTCTWEGISCDQNNSRVTGINLAGDHISGGMFTNFSSVTELTHLDLSRNTLSGSIPYDLNSCKGLKLLNLSHNILEGQLNLSGLISLETLDLSVNRFSGEIESVFSREVCGSNLVVVNISGNKFSGRIDSCFEECLKLKHLDLSLNKLTGDLWLNLWRLEEFSVSQNDLNGSVSPLIFEQNCTLMVLDLSENHFSGEFPGKIENCRNLVNLNLWGNNFTGLIPSEIGSISGLESLFLGRNKFSREIPQSLVSLEKLVFLDLSRIKFGGDVQEIFGKFTQVKSLGLHGNLYTGGLVSSGILTLPNISRLDISINNFSGPLPVELSGMMNLEYLFLACNQFTGNIPSEIGLLRNLQALDLSYNNLTGSIPTTFGKLTSLLWLMLANNKLTGEIPSELGNCSSLLWLNLADNQFSGKIPSELTSIGVNSMATFEANRQKETVIASSGECLAMKRWIPANYPPFSFVYSILTTKSCRSIWNSLLLGYGIFPICQKDSGVRNLQISGYIQLSGNQLSGEVTSDVSKMQNFSMLSLGSNRLSGKLPPEISQLPLVVLNISKNNFSGEIPVEIGNMKCLQNLDLSYNNFSGIFPTSLNKLTELNKFNISYNPLISGFVPSTGQLSTFEKDSYLGDLLLRLPNFLNITPSESSSDNSRFHRMRNTKLAGVLEFLGITLAIFICGVLAFIVCSLAKNPSNQLNEDFASNSVKIVRLDKTSFTEDDILKATANFSEERIIGKGGFGMVYKGVLQDGRQIAVKKLVREGIEGEKEFQAEMEVLSKGWPHPNLVTLYGWCLNGSEKILVYEFMEGGTLEDLILDRVQLTSQRRMEVITDIARALVFLHHNCFPAIVHRDVKAGNVLLDKTGKARVTDFGLARVVDVGESHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELAMARRALDGGDECLVDWARRVIGSDQEVKLGLVFGSGFEDGLEEMLELLQVGLWCTAESPRDRPSMQDVLDMLTKISSSKLRK 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34230417 34233842 - Conep02aG0185100.1 Cone2ag0823 433290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0823 1074 SMART LRR_typ_2 449 473 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 597 621 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 159 182 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 304 328 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 644 667 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 425 448 IPR003591 -
Cone2ag0823 1074 SMART LRR_typ_2 113 137 IPR003591 -
Cone2ag0823 1074 Pfam Leucine rich repeat N-terminal domain 43 86 IPR013210 -
Cone2ag0823 1074 ProSiteProfiles Protein kinase domain profile. 799 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0823 1074 FunFam Putative LRR receptor-like serine/threonine-protein kinase 355 513 - -
Cone2ag0823 1074 SUPERFAMILY Protein kinase-like (PK-like) 771 1064 IPR011009 -
Cone2ag0823 1074 SUPERFAMILY L domain-like 215 495 - -
Cone2ag0823 1074 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine Rich Repeat 403 423 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine Rich Repeat 259 280 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine Rich Repeat 647 668 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine Rich Repeat 161 181 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine Rich Repeat 623 644 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524(InterPro)
Cone2ag0823 1074 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 155 354 - -
Cone2ag0823 1074 Gene3D Transferase(Phosphotransferase) domain 1 876 1074 - -
Cone2ag0823 1074 Pfam Protein kinase domain 800 1061 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0823 1074 Gene3D Ribonuclease Inhibitor 41 182 IPR032675 -
Cone2ag0823 1074 Pfam Leucine rich repeat 426 486 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 Pfam Leucine rich repeat 281 337 IPR001611 GO:0005515(InterPro)
Cone2ag0823 1074 SMART serkin_6 799 1071 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0823 1074 SUPERFAMILY L domain-like 578 697 - -
Cone2ag0823 1074 CDD STKc_IRAK 805 1067 - -
Cone2ag0823 1074 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 876 1072 - -
Cone2ag0823 1074 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 370 1068 IPR050647 -
Cone2ag0823 1074 Gene3D Ribonuclease Inhibitor 183 255 IPR032675 -
Cone2ag0823 1074 Gene3D Ribonuclease Inhibitor 256 344 IPR032675 -
Cone2ag0823 1074 SUPERFAMILY L domain-like 43 246 - -
Cone2ag0823 1074 Gene3D Ribonuclease Inhibitor 345 505 IPR032675 -
Cone2ag0823 1074 Gene3D Ribonuclease Inhibitor 551 723 IPR032675 -
Cone2ag0823 1074 PRINTS Leucine-rich repeat signature 116 129 - -
Cone2ag0823 1074 PRINTS Leucine-rich repeat signature 425 438 - -
Cone2ag0823 1074 FunFam Leucine-rich repeat receptor protein kinase MSP1 762 875 - -
Cone2ag0823 1074 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0823 1074 Gene3D Phosphorylase Kinase; domain 1 761 875 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0823 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0823 Cone-Chr2:34230417 Cone17ag0290 Cone-Chr17:1391782 2.75E-61 dispersed
Cone13ag0052 Cone-Chr13:329681 Cone2ag0823 Cone-Chr2:34230417 7.11E-267 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82628 PF00067 p450 4.90E-56 No_clan Cone PK