Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0830 ATGGAGGGGAAAGAGCTAAATTTGAACAAAGATCCAGGTGATGGGTATAACAACAGTAAGAGTGGAGGGGATGCGTTTATAGATAGGAGCAAGGTGAAGATTTTGCTGTGTGATAATGATTCCAAGAGTTCTGAAGAGGTTTTCACACTTCTTTTGAGATGTTCTTATCAGGTGATCTCAGTGAAGTCAGCTAGACAAGTTATCGATGCACTGAATGCAGAGGGACCCGATATAGACATCATACTTGCGGAAGTAGACTTACCAAGGGCCAAAGGCATGAAAATGTTGAAGTACATAACTCGCGATAAAGACCTCCGGAGAATTCCCGTGATTATGATGTCGACACAAGATGAGGTCTCTATTGTCGTCAAGTGCTTGCGGCTTGGAGCCGCAGATTATCTTGTGAAGCCTTTGCGAACCAATGAGCTACTCAACCTGTGGACCCACATGTGGAGAAGAAGACAGATGCTTGGCCTGACAGAGAAGAACATATTAAACTATGACTTAGATGTGGTTATCTCTGATCCTAGTGATGCCAATACAAACAGCACTACTTTGTTCTCAGATGACACAGACGACAAGTCTCGTAGGACCACCAATCCGGAAATCGGAATATCAACCAACCCGGAAGAAGAGCTTGTTATTGGTATGGCTACAGTTGTAGCAGAGTCTCTGGTCATCGATTTATTAGAATGTCGGCCTAATGTGCCTGGAATTAGTGATCGCCGTACTGGACAACTCTCATGTGGACCAAAAAAGAGTGAACTAAAGATCGGGGAATCCTCAGCCTTCTTCACCTATGTCAAAGCAAGCACGCTTAAAAGGAACTCCATCCAAGTACAAGACATGGGTCCTGCTAAACAACATTCAAGGATGGAGTCTAATCAGCATCAATCATCTGAGAAACCAGCAGCAAACGATTCACAGCAACAACTACAATTACAGGAAAACCCTGATGCATGGGATATCCACTCACAAGGAAAAGATTTCCCGAGTGGTTCTAGTCTCCCCGATTCTCTTTCCATGGAAAGATCTTGCACACCACCAACTACCGAAGAGAAATTCACTCCAGGACCTGCTGCCGCCACCTCCATGAATCCTAGGACCGGGCCCACACAACTGGCTTACCCATTTCACATGCCAGGTGTCATGAACCCGTTAATGGTCCCAGCACCGTATGGTCATCACCATCTCCATCATTACCCCCATGGTATAACCCAAATGACCCATTTCCCATTGTACTCTCCTATGGTACAACAACCCAGTCAGATGCCTAATAATCATCATCCTCATAATCTATGGCCGACTTTTGGAAGCTCATCATTTGGTGAAGTGAAAGTAAGCAAAGTTGATAGAAGAGAGGCGGCTTTGATGAAGTTCAGGCAGAAGAGAAAGGAGCGCTGCTTCGATAAGAAGATAAGGTATGTTAATAGGAAAAGGTTGGCCGAAAGGAGGCCTAGGGTCCAGGGCCAGTTTGTGAGAAAGGTGAATGGTGTGAACGTGGATCTTGATGGGCAACCTGCTTCTGCTGATGAAGGAGACGAGGATGATGATGAGGAATCTCAAGGATGA 1572 45.36 MEGKELNLNKDPGDGYNNSKSGGDAFIDRSKVKILLCDNDSKSSEEVFTLLLRCSYQVISVKSARQVIDALNAEGPDIDIILAEVDLPRAKGMKMLKYITRDKDLRRIPVIMMSTQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRQMLGLTEKNILNYDLDVVISDPSDANTNSTTLFSDDTDDKSRRTTNPEIGISTNPEEELVIGMATVVAESLVIDLLECRPNVPGISDRRTGQLSCGPKKSELKIGESSAFFTYVKASTLKRNSIQVQDMGPAKQHSRMESNQHQSSEKPAANDSQQQLQLQENPDAWDIHSQGKDFPSGSSLPDSLSMERSCTPPTTEEKFTPGPAAATSMNPRTGPTQLAYPFHMPGVMNPLMVPAPYGHHHLHHYPHGITQMTHFPLYSPMVQQPSQMPNNHHPHNLWPTFGSSSFGEVKVSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVQGQFVRKVNGVNVDLDGQPASADEGDEDDDEESQG 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34314094 34318903 - Conep02aG0185800.1 Cone2ag0830 433297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0830 523 MobiDBLite consensus disorder prediction 1 21 - -
Cone2ag0830 523 MobiDBLite consensus disorder prediction 278 320 - -
Cone2ag0830 523 SMART REC_2 32 147 IPR001789 GO:0000160(InterPro)
Cone2ag0830 523 MobiDBLite consensus disorder prediction 508 523 - -
Cone2ag0830 523 MobiDBLite consensus disorder prediction 499 523 - -
Cone2ag0830 523 MobiDBLite consensus disorder prediction 182 204 - -
Cone2ag0830 523 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160(InterPro)
Cone2ag0830 523 MobiDBLite consensus disorder prediction 278 373 - -
Cone2ag0830 523 MobiDBLite consensus disorder prediction 328 352 - -
Cone2ag0830 523 Gene3D - 32 225 - -
Cone2ag0830 523 Pfam CCT motif 453 495 IPR010402 GO:0005515(InterPro)
Cone2ag0830 523 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 249 IPR045279 GO:0009736(InterPro)
Cone2ag0830 523 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160(InterPro)
Cone2ag0830 523 SUPERFAMILY CheY-like 28 157 IPR011006 -
Cone2ag0830 523 ProSiteProfiles CCT domain profile. 453 495 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0830 K12127 - - cit:102626186 595.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0830 Cone-Chr2:34314094 Cone5ag0728 Cone-Chr5:3135786 1.73E-27 dispersed
Cone16ag0184 Cone-Chr16:1189286 Cone2ag0830 Cone-Chr2:34314094 8.11e-312 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g582 . . . . . . . . Cmo13g01203 . . . . . . Cpe20g00010 . . . . . . . . . . . . . . . Cone2ag0830 . . . . Csa01g00568 . . . . . . . . . . . . . . . Car13g00976 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45731 PF13243 SQHop_cyclase_C 1.70E-53 CL0059 Cone TR