Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0836 ATGTTCCTTTTAAAAAGATGCTCCACCGGGAAAGAGTTAAATCAAATCCATTCCCATATCATACACTTGGGTTTTGAGCAAAACCTATTTTTGGTTGGCAAGATCATCGTGTTTTGTGCTGTTTCCGAGTTTGTAGACATGGATTATGCAGTTTCGGTTTTCGACCGAATCGAAAACCCAGATGGGTTTCTCTTTAACACCATGATTAGAGGTTTTGGTAAAGCTAATATCCCAGAAAGAGCTTTTGGATTTTATGAGCAAATGCAAAGGAAAGGCATGGCGGCTGACAATTTCACATTGTCTTTCTTACTTAAAGTTTCGGAAAATTTGGGATCAGTTCTTTTAGGGAAACAATTACACTGTAATATTCTGAAACTTGGCTTACATTCTCATGAGTTTGTGAGGAACACTCTGATCCATGTCTATGGCATGTTTAAGGATACTAAAACCGCACTCCATCTGTTCGATGAAATTTCGGAACCAAGTTTAGTTTCTTGGAACACTATCATTGATTGTCATGTCAATTGTGGAATGTTCAAAGAAGCCATTGAATTATTTTTGTTGATGTTAAAGAGTGGTATGGATCCGGACGAGGCCACATTGGTTGTAATCTTATCCGCTTGTTCTTCATTCGGGGCATTAGAGTTCGGAACTTGGGTTCATTCATGTATTAATGATAATCATAGTATTAGTCTTCAAAAGAGCATACCCATCTCAAATTCTTTAATCGACATGTATGCTAAGTGTGGATTTTTCGAACAAGCCTATGAAATATTTGACAGGATGGAGAAGAAGAGTATTGTAACATGGAATACAATGATTATGGGGTTAGCAACTCATGGAGAAGCCAATAAGGCATTGGAAGTTTTTGTAAAGTTGTCGGAAGAGAAGTATATGAAACCAGATGAGATTACTTTCTTGGGAGTTTTATGTGCTTGTAGCCATGGAGGAAAGGTAGATGAAGGGAGAAAATATTTTGATCTCATGAGGAAAGAATACTTGATCAAACCAACATTAAAGCACTATGGATGCATGGTGGACATTCTTGGAAGAGCTGGGTTTGTGGAAGAGGCTTACGATTTGGTGAAAAGTATGCCTATGGAGTGCAATTCGATCGTATGGAGGATATTATTGGCGGCTTGTAGTGTCCATGGAAATGTCAGGTTGGGGGAGACTGTGAGGAGGCATCTTCTGGAACTAGATCCGGATCATAGTAGCGACTATGTTCTTCTGGCAAATACTTATGCGAGTGTTGATCAGTGGAACGATATGATCGAAGTGAGACAGTTGATGAATGATAGAGGTGCTCATAAATCGAAGCCAGGAAATAGCTACATAACTCAAGCATTCATTGCCATAAGAGAGTGGTTTTCTTGA 1377 38.93 MFLLKRCSTGKELNQIHSHIIHLGFEQNLFLVGKIIVFCAVSEFVDMDYAVSVFDRIENPDGFLFNTMIRGFGKANIPERAFGFYEQMQRKGMAADNFTLSFLLKVSENLGSVLLGKQLHCNILKLGLHSHEFVRNTLIHVYGMFKDTKTALHLFDEISEPSLVSWNTIIDCHVNCGMFKEAIELFLLMLKSGMDPDEATLVVILSACSSFGALEFGTWVHSCINDNHSISLQKSIPISNSLIDMYAKCGFFEQAYEIFDRMEKKSIVTWNTMIMGLATHGEANKALEVFVKLSEEKYMKPDEITFLGVLCACSHGGKVDEGRKYFDLMRKEYLIKPTLKHYGCMVDILGRAGFVEEAYDLVKSMPMECNSIVWRILLAACSVHGNVRLGETVRRHLLELDPDHSSDYVLLANTYASVDQWNDMIEVRQLMNDRGAHKSKPGNSYITQAFIAIREWFS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34375726 34377102 + Conep02aG0186400.1 Cone2ag0836 433303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0836 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Cone2ag0836 458 Pfam PPR repeat 136 158 IPR002885 -
Cone2ag0836 458 Pfam PPR repeat 342 366 IPR002885 -
Cone2ag0836 458 Gene3D Tetratricopeptide repeat domain 2 110 IPR011990 GO:0005515(InterPro)
Cone2ag0836 458 Gene3D Tetratricopeptide repeat domain 239 456 IPR011990 GO:0005515(InterPro)
Cone2ag0836 458 Gene3D Tetratricopeptide repeat domain 111 236 IPR011990 GO:0005515(InterPro)
Cone2ag0836 458 Pfam PPR repeat family 60 105 IPR002885 -
Cone2ag0836 458 Pfam PPR repeat family 266 314 IPR002885 -
Cone2ag0836 458 Pfam PPR repeat family 161 209 IPR002885 -
Cone2ag0836 458 SUPERFAMILY TPR-like 229 421 IPR011990 GO:0005515(InterPro)
Cone2ag0836 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cone2ag0836 458 Pfam E motif 384 446 IPR046848 -
Cone2ag0836 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Cone2ag0836 458 FunFam Pentatricopeptide repeat-containing protein chloroplastic 73 227 - -
Cone2ag0836 458 NCBIfam pentatricopeptide repeat 164 198 IPR002885 -
Cone2ag0836 458 NCBIfam pentatricopeptide repeat 305 331 IPR002885 -
Cone2ag0836 458 NCBIfam pentatricopeptide repeat 240 268 IPR002885 -
Cone2ag0836 458 NCBIfam pentatricopeptide repeat 268 297 IPR002885 -
Cone2ag0836 458 NCBIfam pentatricopeptide repeat 64 96 IPR002885 -
Cone2ag0836 458 PANTHER OS07G0578800 PROTEIN-RELATED 150 447 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone2ag0836 458 FunFam Pentatricopeptide repeat-containing protein 238 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0836 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0178 Cone-Chr16:1144809 Cone2ag0836 Cone-Chr2:34375726 1.98E-89 dispersed
Cone1ag1720 Cone-Chr1:58043069 Cone2ag0836 Cone-Chr2:34375726 1.58E-82 dispersed
Cone2ag0836 Cone-Chr2:34375726 Cone18ag0846 Cone-Chr18:5785112 4.35E-103 dispersed
Cone13ag0274 Cone-Chr13:1925196 Cone2ag0836 Cone-Chr2:34375726 1.88E-83 transposed
Cone12ag0834 Cone-Chr12:7529176 Cone2ag0836 Cone-Chr2:34375726 1.04E-76 transposed
Cone19ag0945 Cone-Chr19:7226880 Cone2ag0836 Cone-Chr2:34375726 4.24E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g570 . . . . . . . . . . Cma10g00200 . Car10g00191 . . . . . . . . . . . Cla06g01583 . . . . . . Cone2ag0836 . . . . . . . . . . . . . . . . Cmo10g00218 . . . . . . . . . . . . . . . . . . . . . Lsi06g01455 Csa01g00245 Chy02g02488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013538 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 0 1 1 2 1 1 1 1 1 26