Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0840 ATGGCCACAGTGACAACTCAAGCTTCAGCCGCTATACTCCGACCATGTGCCGAAAAAACCCGGTTCCTCACTGGGTCTTCTGTTAAACTCACCAGTGCTTTGTCTGTTAAGTCAATGCCATCTTCTTCTTCTTCTTCAACTTCCTTCAAAGTCGAGGCCAGGAAAGGAGAGTGGTTGCCTGGTTTAGCCTCACCTAACTACCTCAACGGCAGTCTTCCAGGTGACAATGGTTTCGACCCTCTCGGGTTAGCAGAGGACCCAGAGAACTTGAAGTGGTTCGTACAAGCAGAGCTCGTGAATGGCAGATGGGCAATGCTCGGAGTAGCAGGGATGCTTCTTCCAGAAGTATTTACAAGCATCGGGATTCTGAACGTACCCAAATGGTATGATGCGGGGAAAGCAGAGTACTTTGCATCATCATCTACACTTCTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCAGACGGTGGCAAGATATTAAGAACCCGGGAAGTGTTAATCAGGACCCAATTTTCAAGCAATACAGTTTGCCCCCAAATGAGGTTGGATACCCTGGTGGCATTTTCAACCCTCTCAACTTTGCTCCCACTCCTGAAGCTAAAGAGAAGGAAATTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACATAATGTCACTGGAAAGGGGCCATTTGACAACCTGTTGCAGCACCTATCAGACCCATGGCACAACACCATTGTTCAAACACTAAGGGGCTAA 762 47.64 MATVTTQASAAILRPCAEKTRFLTGSSVKLTSALSVKSMPSSSSSSTSFKVEARKGEWLPGLASPNYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFASSSTLLVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTPEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLRG 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34403965 34405602 + Conep02aG0187000.1 Cone2ag0840 433307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0840 253 SUPERFAMILY Chlorophyll a-b binding protein 54 251 - -
Cone2ag0840 253 Gene3D Chlorophyll a/b binding protein domain 65 244 - -
Cone2ag0840 253 Pfam Chlorophyll A-B binding protein 65 224 IPR022796 -
Cone2ag0840 253 FunFam Chlorophyll a-b binding protein, chloroplastic 65 244 - -
Cone2ag0840 253 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 27 247 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1346 Cone-Chr1:56525339 Cone2ag0840 Cone-Chr2:34403965 5.61E-48 dispersed
Cone2ag0840 Cone-Chr2:34403965 Cone8ag0754 Cone-Chr8:7634588 9.24E-74 dispersed
Cone16ag0175 Cone-Chr16:1117713 Cone2ag0840 Cone-Chr2:34403965 1.06E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0840 K08910 - sly:101268669 452.595