Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0842 ATGACTTCAATTGCCCTTAAATCCTTCACCGGTCTCCGGCAATCCTCACCGGAAAAACTCCATTTCACGTCACAAACAAAACCGACATCTGCCTCTCACCCCCACCGTCGTTTCTACGTTTCCGCGGCGAAAACAAGCCCGAAAGTCACCGGCCGCAACCTCAGAGTAGCCGTCATAGGAGGCGGACCGGCCGGCGGTGCCGCGGCGGAGACTCTATCCAGGGGAGGAATCGAAACCTTCCTCATCGAACGCAAAATGGACAACTGCAAGCCGTGCGGCGGAGCAATCCCGCTCTGCATGGTCGGTGAGTTCGACCTGCCGTTGGACCTGATCGACCGGCGAGTTACGAAGATGAAGATGATATCGCCATCGAACGTAGCCGTCGACATCGGCCGGACGTTGAAGCCACATGAGTACATAGGGATGGTGAGGAGAGAGGTTCTGGACGCGTATTTAAGAAACAGGGCGGCGGAAAACGGGGCGAATGTGATAAACGGGTTGTTTTTGAAAATGGATAGTCCGAAAGAGCATAATTCACCATATTTGCTACATTTCACGGAGTATGATGGGAAGCCGGGTGGGGTCGGAGTGAAGAAGACGTTGGAGGTTGATGCCGTGATCGGCGCCGACGGGGCAAATTCCCGGGTTGCTAAGAATATTGGTGCTGGAGATTACGATTATGCCATTGCTTTTCAGGAGAGAATCCGGATCCCAGACGACAAAATGAAGTACTATGAGGATCTCGCAGAGATGTACGTGGGGGATGATGTCTCACCTGATTTCTACGGATGGGTTTTCCCGAAATGTGACCATGTTGCAGTCGGAACTGGCACGGTGACTCACAAGGGAGACATCAAGAAGTTCCAACTAGCGACAAGGAACCGAGCCAAGGACAAGATTCAAGGAGGCAAGATTATCCGGGTTGAGGCCCATCCGATCCCGGAACACCCCCGGCCCAAAAGGGTATCGAACCGAGTAGCCCTAGTTGGAGATGCAGCAGGGTACGTGACGAAATGCTCAGGCGAAGGCATCTACTTTGCGGCCAAGAGTGGGAGGATGTGTGCTGAGGCGATAGTGGAAGGATCAGAGAACGGGAAGAGGATGGTGAATGAAGGGGATTTGAGGAAGTATTTAGAGAAATGGGACAAGACCTATTGGCCAACTTACAAGGTCTTGGATGTGTTGCAGAAGGTGTTTTATAGGTCGAATCCGGCTAGAGAAGCCTTTGTGGAGATGTGTGCGGATGAGTATGTGCAAAAGATGACGTTTGATAGCTATTTGTATAAGCGGGTGGTGCCCGGAAACCCATTGGAGGATTTGAAGTTGGCCGTGAACACGATCGGGAGTTTAGTTAGGGCCAATGCACTTAGGAGGGAGATGGAGAAGATTAGTGCATAA 1398 51.93 MTSIALKSFTGLRQSSPEKLHFTSQTKPTSASHPHRRFYVSAAKTSPKVTGRNLRVAVIGGGPAGGAAAETLSRGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLFLKMDSPKEHNSPYLLHFTEYDGKPGGVGVKKTLEVDAVIGADGANSRVAKNIGAGDYDYAIAFQERIRIPDDKMKYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKIQGGKIIRVEAHPIPEHPRPKRVSNRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVNEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMEKISA 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34427363 34429379 + Conep02aG0187200.1 Cone2ag0842 433309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0842 465 NCBIfam geranylgeranyl reductase 54 452 IPR011774 GO:0045550(InterPro)
Cone2ag0842 465 NCBIfam geranylgeranyl reductase family protein 56 358 IPR011777 GO:0016628(InterPro)
Cone2ag0842 465 SUPERFAMILY FAD/NAD(P)-binding domain 53 436 IPR036188 -
Cone2ag0842 465 Gene3D - 54 465 IPR036188 -
Cone2ag0842 465 NCBIfam geranylgeranyl diphosphate reductase 55 452 IPR010253 GO:0015979(InterPro)|GO:0015995(InterPro)|GO:0045550(InterPro)
Cone2ag0842 465 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 - -
Cone2ag0842 465 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Cone2ag0842 465 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Cone2ag0842 465 FunFam Geranylgeranyl diphosphate reductase 53 460 - -
Cone2ag0842 465 MobiDBLite consensus disorder prediction 16 32 - -
Cone2ag0842 465 MobiDBLite consensus disorder prediction 16 35 - -
Cone2ag0842 465 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 51 456 IPR050407 GO:0009535(PANTHER)|GO:0015995(PANTHER)|GO:0045550(PANTHER)
Cone2ag0842 465 Pfam FAD binding domain 55 87 IPR002938 GO:0071949(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0842 K10960 - - mdm:103424544 835.099
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0027 Cone-Chr18:184035 Cone2ag0842 Cone-Chr2:34427363 2.07E-139 dispersed
Cone16ag0172 Cone-Chr16:1090163 Cone2ag0842 Cone-Chr2:34427363 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g559 Blo04g00772 . . . . . . . . . Cma10g00194 . Car10g00184 Car11g00153 Sed08g0217 . Cpe04g01498 Bhi02g00313 Tan09g2119 Cmetu02g1781 . Hepe09g0116 . . . . . . . . . Cone2ag0842 . . . . . . . . . . Bda14g00854 . Bpe15g00600 . . . Cmo10g00209 Cmo11g00168 . . . . . Cpe18g00792 . . . . . . . . . . . . . . . Csa01g00237 Chy02g02495 Cme02g01881
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36