Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0848 ATGAATTGTGCTCGAGATCTCTGCCTAGCTGTACTGAGCAAATGCAAAACACTCAAAACCGTGCACCAAGTTCACGCCTTGGCATGCAAAACAGGCTTAGAAACCGACCCATTATTTGCCGGAAAGATCCTCCTTCACTGTGCCTCCACCATCTCTAACGCTATCGACTATGCTCGCCATTTCTTCTACCAATTTCCGAACCCAGATACTTTCATGTACAACACTCTTATTCGCATCCTTGCAGATTCCGATTCTTTACAAAATGCTCTCTACCTGTTTATTGCAATGCTTCAGAGAAAATCTACAGCTCCTCCTGATAGCTTCTCTTTTGCGTTTGTACTCAAATCGGTTGCTAATTCCAGGGATTTAAGATCTGGAATGCAATTACATTCTCAAGCTTTTAGTTATGGGATGGATGCACATCTTTTTGTAGGGACTACTCTGATCAGTATGTATGCAGAATGTGGTTTTATAGACTTTGCACGCAAAGTGTTTGATGAAATGTCTGCTCCAAATGTTGTTGCTTGGAATGCTGTTCTTACGGCTTGTTTTAGGTGTGAGGATTTTCCGAGTGTTAAGATGATTTTTAGTCAAATGCCGATGAGAAATTTGACCTCTTGGAATGTAGTGCTTGCTAGGTATATGAAAGCAGGTGAGCTTGAGCTAGCAAGGGATGTGTTTATGAATATGCCTATTAAAGATGATGTGTCTTGGAGTACTATGATTTCTGGATTTGCTCATTATGGTAGTTTTGATTATGCTTTTGAATTTTTCAGGGAGTTAAATAGGTTATGCATGAGACCTAATGAGGTGAGCTTGACAGGGGTTTTCTCTGCTTGTTCTCAAGCCGGGGCATTAGAATTTGGAAAAATATTACATGGGTTTGTTGAGAAATCTGGGTTTCTTCATATTATCCCCGTGAATAATGCATTGATTGATACTTACTCCAAATGTGGAGACTTAGACATGGCTAAGTTGGTGTTTGAAACAATGCCTGAAAATAAGAGCATTGTCTCTTGGACAGCCATGGTTGCAGGGTATGCAATGCAAGGTCATGGGGAAGAAGCGATAGAATTATTTGACAAAATTGAAGAAGAGTCTAGAGTTAGGCCAGATGGGGTTACCTTTATTTCGATTCTATATGCTTGTAGTCATGCCGGATTAATAGAGCAAGGAACTAGGTATTTTTCCAAGATGATAGATATGTATAAGATAGAGCCAGCCATTGAACATTATGGGTGTATGGTAGATCTATACGGTAGAGCTGGTAAATTAAAGGAAGCGTTTGAATTTGTATGTCAAATGCCGATTTCTCCTAATGCTATAATTTGGAGAACTCTTCTCGGTGCTTGTAGCATTCACGGTGATTTAAAGTTGGCAGAGAAGGTAAAGACTAAGCTTTCTGAACTTGATCCGAATAATTCAGGGGATCATGTTCTTTTATCAAATATCTATGCTTTTTCCGGAAAATGGAAGGATGTTTCAAGTTTAAGAAGATCAATGATAGACCGAAGAATTAGGAAAAAGCCTGGTTGGAGCATGATTGAAGTTGATAAGATTATGTATAGTTTTGTGGCGGGCGACAAACAAAACGAGGGAACCGAAGAGGCTTATGAGAAGCTAATGGAGATTATGTTGAAGCTTAGGGTTGAAGGAGGTTATGTTCCGGAAATCAGGACTGTTTTACATGATATAGAAGAGGAGGAAAAGGAAGATTCAGTTTCAGTTCATAGTGAGAAGCTAGCTGTAGCGTTTGGATTGGCGAGATTGAGGGAGGGAATGAGGAGTATAAGGGTGGTGAAGAACTTGAGAACTTGTAGGGATTGTCATAATGTAATGAAGTTGATTTCTAGGGTTTATAGGGTGGACATTGTGTTAAGGGATAGAAGTCGTTTTCATTCGTTCAGATTTGGGTCTTGCTCGTGCAAAGATTATTGGTGA 1941 39.72 MNCARDLCLAVLSKCKTLKTVHQVHALACKTGLETDPLFAGKILLHCASTISNAIDYARHFFYQFPNPDTFMYNTLIRILADSDSLQNALYLFIAMLQRKSTAPPDSFSFAFVLKSVANSRDLRSGMQLHSQAFSYGMDAHLFVGTTLISMYAECGFIDFARKVFDEMSAPNVVAWNAVLTACFRCEDFPSVKMIFSQMPMRNLTSWNVVLARYMKAGELELARDVFMNMPIKDDVSWSTMISGFAHYGSFDYAFEFFRELNRLCMRPNEVSLTGVFSACSQAGALEFGKILHGFVEKSGFLHIIPVNNALIDTYSKCGDLDMAKLVFETMPENKSIVSWTAMVAGYAMQGHGEEAIELFDKIEEESRVRPDGVTFISILYACSHAGLIEQGTRYFSKMIDMYKIEPAIEHYGCMVDLYGRAGKLKEAFEFVCQMPISPNAIIWRTLLGACSIHGDLKLAEKVKTKLSELDPNNSGDHVLLSNIYAFSGKWKDVSSLRRSMIDRRIRKKPGWSMIEVDKIMYSFVAGDKQNEGTEEAYEKLMEIMLKLRVEGGYVPEIRTVLHDIEEEEKEDSVSVHSEKLAVAFGLARLREGMRSIRVVKNLRTCRDCHNVMKLISRVYRVDIVLRDRSRFHSFRFGSCSCKDYW 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34480230 34482188 - Conep02aG0187800.1 Cone2ag0848 433315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0848 646 PANTHER OS07G0578800 PROTEIN-RELATED 203 531 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone2ag0848 646 FunFam Pentatricopeptide repeat-containing protein At2g34400 293 545 - -
Cone2ag0848 646 Pfam PPR repeat family 336 384 IPR002885 -
Cone2ag0848 646 Gene3D Tetratricopeptide repeat domain 403 582 IPR011990 GO:0005515(InterPro)
Cone2ag0848 646 Gene3D Tetratricopeptide repeat domain 297 402 IPR011990 GO:0005515(InterPro)
Cone2ag0848 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cone2ag0848 646 Pfam DYW family of nucleic acid deaminases 553 646 IPR032867 GO:0008270(InterPro)
Cone2ag0848 646 Gene3D Tetratricopeptide repeat domain 170 296 IPR011990 GO:0005515(InterPro)
Cone2ag0848 646 Gene3D Tetratricopeptide repeat domain 6 169 IPR011990 GO:0005515(InterPro)
Cone2ag0848 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cone2ag0848 646 FunFam Pentatricopeptide repeat-containing protein At5g66520 8 169 - -
Cone2ag0848 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Cone2ag0848 646 Pfam E motif 454 516 IPR046848 -
Cone2ag0848 646 NCBIfam pentatricopeptide repeat 338 372 IPR002885 -
Cone2ag0848 646 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 411 435 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 71 99 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 309 334 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 146 168 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 206 230 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 236 262 IPR002885 -
Cone2ag0848 646 Pfam PPR repeat 174 203 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0848 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0848 Cone-Chr2:34480230 Cone19ag0167 Cone-Chr19:956975 5.44E-139 dispersed
Cone4ag1476 Cone-Chr4:11597405 Cone2ag0848 Cone-Chr2:34480230 4.20E-17 dispersed
Cone2ag0848 Cone-Chr2:34480230 Cone7ag0449 Cone-Chr7:2031430 8.43E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29