Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0866 ATGTTAAGGGCAAAGCAAATCAGTAACCTGTCAAGCAGCGCCCGGTCCTTTTTCATAACCGGGTCCCGCTACAATCAAGCAGATGGAAGCTCGTGCACTTCTACATCTGAAGATGAAACTCATATTCCGGAGAAAACGCCTTCCATTTCAGGACCAAAAAGTTTGGCAAGTTTACGGACAGTATCACATTCGAGAAAGGCATCAGAAGGAGTATCCAGGCCCACTTCTTCTATTCAGAAAGATGTAGTAATCCAGGCTTCTCCGGTTTTGGCTGAAAAGCTTGTTATGGCCGGTATAACTACCTTGAATATCATTTCTGATTTGGCCAACTATAAGGTCCCTATATCATCAAGTAGGAATGGAGTATTAGTCAACTCGTCTAAAAACTGTGTGATCGATTCCAGCCGTCCGGTTTCAAGCATCAAGTCATCATCTTATGTAAAACCGATAAAGAGAGAGAACCACTCCGACCTTCACCCCAACAAACCAGCTTCAGAAGCAGCTTTGAGTTCAAAAACGAAGAGTAATCGTTATCATGGTGTTAAGGCAAAAGAGAATACTACACCACTACAGAGACCAACAACACGTGTTGCAAATACAGAACATGTAGTGGAAAACGTTTCTCAGATTCTTAGACAGTTTAATTGGGGCCAAGCTACAGAAGAGACCCTCAAAAACCTGAATTTTTCATTGGATGCTTTTCGTGCGAATCAAATCCTGAAGCAAATACAAGACTACTCCGTTGCACTTGGGTTTTTTGGTTGGTTGAAACAGAAACCGGGATTTAGACATGACGAGCATACATACACGACTATGGTTGGAATCTTGGGTCGTAACAAACAATTTTGGGAAATTACCAAATTGCTCGGGGAAATGGTCAATGATGGGTTGCACCCGAATGTCGTGACGTATAACCGAATCATTCACAGTTATGGCCGAGCTAACTACTTGAAAGAAGCGGTTAATGTTTTTAACCAAATGCTGTCAGAGAAAGTTGAACCAGATCGAGTAACTTATTGCACACTAATTGATATTCACGCGAAAGCCGGGTTTCTTGATATTGCCTTGAGCATGTACGGGAAGATGCAAGAGGCAGGTCTTAGTCCGGACACGTTTACGTATAGTGTTATAATCAACTGTCTCGGAAAAGCTGGACATTTGACCATGGCTTACAAGCTTTTCCGGCAAATGGTGGAACATGGCTGTGTTCCGAATCTTGTCACGTATAACATCATGATTGATCTACAGGTGAAGGCCAGGAATTATCATATCGCTTTGAAGATTTTTGATGATATGCAAAGTGCTGGTTTTCAACCCGATAAAGTGACGTACAATATAGTAATGCAAGTGCTTGGGCATTGCGGTTATCTTATAGAGGCAGAAGCTCTTTTTTTTGAAATGCAAAGGAAGAACTGGGTCCCGGACGAATACGTTTATGGGATTTTAGTCGATTTGTGGGGAAAATCGGGTAATGCTGAGAAGGCTTGGGAATGGTATCGAGCCATGATTGATTCTGGTTTGAGGCCTAATGCTCCGATTTGCAACTCCTTGCTTAGTGCCTTCCTTCGGGTTCACCGGCTTTTCGATGCATATAACTTGGTTCGGGATATGGTTGCTTTCGGTATAAGCCCGTCTAGCCAAACTTATACTTTGCTCCTTAGCTGTTGTACTGACACAAAGTCATTATACGACATGGGCTTTTGCCATGAACTCATGAAGATATCAGGCCACCCAGCCCACGAATTTCTCACAACCATGCCGTCGTCCGGCCCAAACGGTCAAAATGTTAGGGATCATACTACCAAGTTTGTTGACATGATGATGTATAATGAAGATAAAGAGAGTAAGAGAGGCCTTTTTGACGCAATGGTGGATTTTCTTTACAAGTTGGGTCTCAAGGAAGAGGCAGGGTCTGTCTGGGAGGTGGTGGCTAATAAGAGCATCTATCCTGAGGCGGTAAGACAGAAAGGCTCATCATATTGGCTTATCAACCTTCATGTCATGTCCGACGGGACAGCTGTCATAGCCTTATCCCGAACGCTCGCTTGGTTTCGTCAACAGATGTTAACTTGTGGGACAGGTCCGAGCCGGATTGATATTGTAACAGGGTGGGGCCGGAGGAGCCGGGTTACAGGATCATCTTTGGTCAGGCAAGCTGTACAGGAGCTTTTGGATACTTTTGGGTTTCCATTTTTTACGGAGAAAGGGAACTCAGGTTGTTTTGTTAGCTGTGGAGAGTCGCTTAGCAGTTGGTTGCTCCAATCTTATGTAGAGCGTATGCATTTACTATGA 2292 43.76 MLRAKQISNLSSSARSFFITGSRYNQADGSSCTSTSEDETHIPEKTPSISGPKSLASLRTVSHSRKASEGVSRPTSSIQKDVVIQASPVLAEKLVMAGITTLNIISDLANYKVPISSSRNGVLVNSSKNCVIDSSRPVSSIKSSSYVKPIKRENHSDLHPNKPASEAALSSKTKSNRYHGVKAKENTTPLQRPTTRVANTEHVVENVSQILRQFNWGQATEETLKNLNFSLDAFRANQILKQIQDYSVALGFFGWLKQKPGFRHDEHTYTTMVGILGRNKQFWEITKLLGEMVNDGLHPNVVTYNRIIHSYGRANYLKEAVNVFNQMLSEKVEPDRVTYCTLIDIHAKAGFLDIALSMYGKMQEAGLSPDTFTYSVIINCLGKAGHLTMAYKLFRQMVEHGCVPNLVTYNIMIDLQVKARNYHIALKIFDDMQSAGFQPDKVTYNIVMQVLGHCGYLIEAEALFFEMQRKNWVPDEYVYGILVDLWGKSGNAEKAWEWYRAMIDSGLRPNAPICNSLLSAFLRVHRLFDAYNLVRDMVAFGISPSSQTYTLLLSCCTDTKSLYDMGFCHELMKISGHPAHEFLTTMPSSGPNGQNVRDHTTKFVDMMMYNEDKESKRGLFDAMVDFLYKLGLKEEAGSVWEVVANKSIYPEAVRQKGSSYWLINLHVMSDGTAVIALSRTLAWFRQQMLTCGTGPSRIDIVTGWGRRSRVTGSSLVRQAVQELLDTFGFPFFTEKGNSGCFVSCGESLSSWLLQSYVERMHLL 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34620480 34623372 + Conep02aG0189600.1 Cone2ag0866 433333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0866 763 Gene3D - 640 743 IPR036063 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 513 545 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 442 476 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 267 301 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 407 440 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 477 511 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 302 335 IPR002885 -
Cone2ag0866 763 NCBIfam pentatricopeptide repeat 337 371 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cone2ag0866 763 SUPERFAMILY SMR domain-like 661 742 IPR036063 -
Cone2ag0866 763 Gene3D Tetratricopeptide repeat domain 357 435 IPR011990 GO:0005515(InterPro)
Cone2ag0866 763 Pfam PPR repeat 478 507 IPR002885 -
Cone2ag0866 763 Pfam PPR repeat 268 297 IPR002885 -
Cone2ag0866 763 MobiDBLite consensus disorder prediction 26 77 - -
Cone2ag0866 763 SUPERFAMILY HCP-like 303 506 - -
Cone2ag0866 763 MobiDBLite consensus disorder prediction 152 192 - -
Cone2ag0866 763 Pfam PPR repeat family 404 451 IPR002885 -
Cone2ag0866 763 Pfam PPR repeat family 299 347 IPR002885 -
Cone2ag0866 763 Pfam PPR repeat family 509 556 IPR002885 -
Cone2ag0866 763 Pfam PPR repeat 366 398 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Smr domain profile. 663 744 IPR002625 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cone2ag0866 763 SMART SMR_2 660 746 IPR002625 -
Cone2ag0866 763 MobiDBLite consensus disorder prediction 50 77 - -
Cone2ag0866 763 PANTHER OS03G0856100 PROTEIN 38 758 - -
Cone2ag0866 763 Gene3D Tetratricopeptide repeat domain 447 566 IPR011990 GO:0005515(InterPro)
Cone2ag0866 763 Gene3D Tetratricopeptide repeat domain 203 351 IPR011990 GO:0005515(InterPro)
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Cone2ag0866 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0866 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0093 Cone-Chr13:571071 Cone2ag0866 Cone-Chr2:34620480 8.97E-116 wgd
Cone16ag0141 Cone-Chr16:803408 Cone2ag0866 Cone-Chr2:34620480 6.54E-271 wgd
Cone19ag0096 Cone-Chr19:543865 Cone2ag0866 Cone-Chr2:34620480 2.46E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33