Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0880 ATGTCAAATCCTGGCAAAAAGTCGATTCGACTGATTCCTCCTCTAGCTCTCAGATCTGCAGCAACGGCGGCGGCTTCCTCCTCCATGCCTGAGTCTTCTTCCTCCAAAGACCACAACTATAGCAGGAAACAGAAATCCCTCGGCCTTCTCTGCACCAAATTCCTGAGCTTGTACGACCGCGATGGCGCCCACTCCATTGGCCTCGATGATGCAGCATCCAAATTAGGTGTTGAGAGGCGGCGGATCTACGACATTGTAAATGTATTGGAGAGTGTAGGGGTTCTTGCTAGGAAGGGAAAAAATCAGTATATTTGGAAAGGGTATGGAGCAATCCCTGCTGCTTTACAAGAGCTTAAGGAAGAGGCCGTGAAGGATAATTGCTATGGTTCTGATGCTAACGATTGCACAAGAGTTTCGGATGATGAAGATGACGATGAAGAAGGGTGTACAAATCCCAACACTGGGAGCCATAACTCAATCAATACCAGTTCTAAATCCTCAGGATCAACAAAAAATGATAACCGGAGGGAGAAATCTTTGGCACTTCTTGCACAGAATTTTTTGAAGCTCTTTGTTTGCTCTAATGTGGATCTTATTTCCCTTGATGATGCTGCAAAGTTGTTGATAGGGGATGCGAACAGCTCAGCGATAATGAGAACGAAAGTAAGACGGCTATACGATATTGCAAATGTATTGTCTTCAATGGCCTTGATCGAGAAGACCTATACATCAGACCGAAGAAAGCCTGCATTTAGATGGTTGGGGTTTAAAGGGAAATATAAGAATGAGTCTCCTTTAAGTGTGCTTCCCTCAGAGTCGATGAAACGGAAATTTGGAACTGATGTTACAAACATGAGTTGTAAGACGAGCAGAATAGGAAGTTCAACAGGACTAAATGCAACCTGGAACTTTAACGTGCAAAAGCAATTGAAGAAAAATAATTTTCCAATCGAAGCCGATGAAAATTATTTGGAGCGAGAATGTATTGAGGGCCAAAAGAGCTACCAGTTTGGACCTTTTGCTCCTGCAGCCATGGCCAAGGTTGGTGTCTCTAACAATACTAACAATGTGAACTCGGTTCATGACTGGCACAACCTTGCCTCTACTTATCGTCCTCAGTATCAGAATCAAGCTTTACGACAACTCTTCGACCATTACTCCGAAGCATGGAAATCTTGGTTTTCAGAAGCCGCAAAGAAACCGATATGA 1209 43.76 MSNPGKKSIRLIPPLALRSAATAAASSSMPESSSSKDHNYSRKQKSLGLLCTKFLSLYDRDGAHSIGLDDAASKLGVERRRIYDIVNVLESVGVLARKGKNQYIWKGYGAIPAALQELKEEAVKDNCYGSDANDCTRVSDDEDDDEEGCTNPNTGSHNSINTSSKSSGSTKNDNRREKSLALLAQNFLKLFVCSNVDLISLDDAAKLLIGDANSSAIMRTKVRRLYDIANVLSSMALIEKTYTSDRRKPAFRWLGFKGKYKNESPLSVLPSESMKRKFGTDVTNMSCKTSRIGSSTGLNATWNFNVQKQLKKNNFPIEADENYLERECIEGQKSYQFGPFAPAAMAKVGVSNNTNNVNSVHDWHNLASTYRPQYQNQALRQLFDHYSEAWKSWFSEAAKKPI 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34706175 34708963 + Conep02aG0191000.1 Cone2ag0880 433347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0880 402 MobiDBLite consensus disorder prediction 135 173 - -
Cone2ag0880 402 FunFam E2F transcription factor 8 37 109 - -
Cone2ag0880 402 SUPERFAMILY Winged helix DNA-binding domain 177 256 IPR036390 -
Cone2ag0880 402 SUPERFAMILY Winged helix DNA-binding domain 41 105 IPR036390 -
Cone2ag0880 402 Pfam E2F/DP family winged-helix DNA-binding domain 43 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 Pfam E2F/DP family winged-helix DNA-binding domain 176 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 MobiDBLite consensus disorder prediction 151 169 - -
Cone2ag0880 402 PANTHER TRANSCRIPTION FACTOR E2F 19 378 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone2ag0880 402 SMART E2F_TDP_2 175 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 SMART E2F_TDP_2 42 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 Gene3D - 169 257 IPR036388 -
Cone2ag0880 402 Gene3D - 37 110 IPR036388 -
Cone2ag0880 402 FunFam E2F transcription factor-like E2FE 170 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0880 K09391 - - csv:101219210 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0880 Cone-Chr2:34706175 Cone5ag1327 Cone-Chr5:7825728 1.20E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone2ag0880 Cone-Chr2:34706175 3.17E-141 wgd
Cone16ag0130 Cone-Chr16:738356 Cone2ag0880 Cone-Chr2:34706175 1.47E-226 wgd
Cone19ag0118 Cone-Chr19:663153 Cone2ag0880 Cone-Chr2:34706175 3.18E-139 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45739 PF13041 PPR_2 4.70E-08 CL0020 Cone TF