Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0880 ATGTCAAATCCTGGCAAAAAGTCGATTCGACTGATTCCTCCTCTAGCTCTCAGATCTGCAGCAACGGCGGCGGCTTCCTCCTCCATGCCTGAGTCTTCTTCCTCCAAAGACCACAACTATAGCAGGAAACAGAAATCCCTCGGCCTTCTCTGCACCAAATTCCTGAGCTTGTACGACCGCGATGGCGCCCACTCCATTGGCCTCGATGATGCAGCATCCAAATTAGGTGTTGAGAGGCGGCGGATCTACGACATTGTAAATGTATTGGAGAGTGTAGGGGTTCTTGCTAGGAAGGGAAAAAATCAGTATATTTGGAAAGGGTATGGAGCAATCCCTGCTGCTTTACAAGAGCTTAAGGAAGAGGCCGTGAAGGATAATTGCTATGGTTCTGATGCTAACGATTGCACAAGAGTTTCGGATGATGAAGATGACGATGAAGAAGGGTGTACAAATCCCAACACTGGGAGCCATAACTCAATCAATACCAGTTCTAAATCCTCAGGATCAACAAAAAATGATAACCGGAGGGAGAAATCTTTGGCACTTCTTGCACAGAATTTTTTGAAGCTCTTTGTTTGCTCTAATGTGGATCTTATTTCCCTTGATGATGCTGCAAAGTTGTTGATAGGGGATGCGAACAGCTCAGCGATAATGAGAACGAAAGTAAGACGGCTATACGATATTGCAAATGTATTGTCTTCAATGGCCTTGATCGAGAAGACCTATACATCAGACCGAAGAAAGCCTGCATTTAGATGGTTGGGGTTTAAAGGGAAATATAAGAATGAGTCTCCTTTAAGTGTGCTTCCCTCAGAGTCGATGAAACGGAAATTTGGAACTGATGTTACAAACATGAGTTGTAAGACGAGCAGAATAGGAAGTTCAACAGGACTAAATGCAACCTGGAACTTTAACGTGCAAAAGCAATTGAAGAAAAATAATTTTCCAATCGAAGCCGATGAAAATTATTTGGAGCGAGAATGTATTGAGGGCCAAAAGAGCTACCAGTTTGGACCTTTTGCTCCTGCAGCCATGGCCAAGGTTGGTGTCTCTAACAATACTAACAATGTGAACTCGGTTCATGACTGGCACAACCTTGCCTCTACTTATCGTCCTCAGTATCAGAATCAAGCTTTACGACAACTCTTCGACCATTACTCCGAAGCATGGAAATCTTGGTTTTCAGAAGCCGCAAAGAAACCGATATGA 1209 43.76 MSNPGKKSIRLIPPLALRSAATAAASSSMPESSSSKDHNYSRKQKSLGLLCTKFLSLYDRDGAHSIGLDDAASKLGVERRRIYDIVNVLESVGVLARKGKNQYIWKGYGAIPAALQELKEEAVKDNCYGSDANDCTRVSDDEDDDEEGCTNPNTGSHNSINTSSKSSGSTKNDNRREKSLALLAQNFLKLFVCSNVDLISLDDAAKLLIGDANSSAIMRTKVRRLYDIANVLSSMALIEKTYTSDRRKPAFRWLGFKGKYKNESPLSVLPSESMKRKFGTDVTNMSCKTSRIGSSTGLNATWNFNVQKQLKKNNFPIEADENYLERECIEGQKSYQFGPFAPAAMAKVGVSNNTNNVNSVHDWHNLASTYRPQYQNQALRQLFDHYSEAWKSWFSEAAKKPI 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34706175 34708963 + Conep02aG0191000.1 Cone2ag0880 433347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0880 402 MobiDBLite consensus disorder prediction 135 173 - -
Cone2ag0880 402 FunFam E2F transcription factor 8 37 109 - -
Cone2ag0880 402 SUPERFAMILY Winged helix DNA-binding domain 177 256 IPR036390 -
Cone2ag0880 402 SUPERFAMILY Winged helix DNA-binding domain 41 105 IPR036390 -
Cone2ag0880 402 Pfam E2F/DP family winged-helix DNA-binding domain 43 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 Pfam E2F/DP family winged-helix DNA-binding domain 176 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 MobiDBLite consensus disorder prediction 151 169 - -
Cone2ag0880 402 PANTHER TRANSCRIPTION FACTOR E2F 19 378 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone2ag0880 402 SMART E2F_TDP_2 175 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 SMART E2F_TDP_2 42 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone2ag0880 402 Gene3D - 169 257 IPR036388 -
Cone2ag0880 402 Gene3D - 37 110 IPR036388 -
Cone2ag0880 402 FunFam E2F transcription factor-like E2FE 170 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0880 Cone-Chr2:34706175 Cone5ag1327 Cone-Chr5:7825728 1.20E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone2ag0880 Cone-Chr2:34706175 3.17E-141 wgd
Cone16ag0130 Cone-Chr16:738356 Cone2ag0880 Cone-Chr2:34706175 1.47E-226 wgd
Cone19ag0118 Cone-Chr19:663153 Cone2ag0880 Cone-Chr2:34706175 3.18E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45739 PF13041 PPR_2 4.70E-08 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0880 K09391 - csv:101219210 465.692