Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone2ag0880 | ATGTCAAATCCTGGCAAAAAGTCGATTCGACTGATTCCTCCTCTAGCTCTCAGATCTGCAGCAACGGCGGCGGCTTCCTCCTCCATGCCTGAGTCTTCTTCCTCCAAAGACCACAACTATAGCAGGAAACAGAAATCCCTCGGCCTTCTCTGCACCAAATTCCTGAGCTTGTACGACCGCGATGGCGCCCACTCCATTGGCCTCGATGATGCAGCATCCAAATTAGGTGTTGAGAGGCGGCGGATCTACGACATTGTAAATGTATTGGAGAGTGTAGGGGTTCTTGCTAGGAAGGGAAAAAATCAGTATATTTGGAAAGGGTATGGAGCAATCCCTGCTGCTTTACAAGAGCTTAAGGAAGAGGCCGTGAAGGATAATTGCTATGGTTCTGATGCTAACGATTGCACAAGAGTTTCGGATGATGAAGATGACGATGAAGAAGGGTGTACAAATCCCAACACTGGGAGCCATAACTCAATCAATACCAGTTCTAAATCCTCAGGATCAACAAAAAATGATAACCGGAGGGAGAAATCTTTGGCACTTCTTGCACAGAATTTTTTGAAGCTCTTTGTTTGCTCTAATGTGGATCTTATTTCCCTTGATGATGCTGCAAAGTTGTTGATAGGGGATGCGAACAGCTCAGCGATAATGAGAACGAAAGTAAGACGGCTATACGATATTGCAAATGTATTGTCTTCAATGGCCTTGATCGAGAAGACCTATACATCAGACCGAAGAAAGCCTGCATTTAGATGGTTGGGGTTTAAAGGGAAATATAAGAATGAGTCTCCTTTAAGTGTGCTTCCCTCAGAGTCGATGAAACGGAAATTTGGAACTGATGTTACAAACATGAGTTGTAAGACGAGCAGAATAGGAAGTTCAACAGGACTAAATGCAACCTGGAACTTTAACGTGCAAAAGCAATTGAAGAAAAATAATTTTCCAATCGAAGCCGATGAAAATTATTTGGAGCGAGAATGTATTGAGGGCCAAAAGAGCTACCAGTTTGGACCTTTTGCTCCTGCAGCCATGGCCAAGGTTGGTGTCTCTAACAATACTAACAATGTGAACTCGGTTCATGACTGGCACAACCTTGCCTCTACTTATCGTCCTCAGTATCAGAATCAAGCTTTACGACAACTCTTCGACCATTACTCCGAAGCATGGAAATCTTGGTTTTCAGAAGCCGCAAAGAAACCGATATGA | 1209 | 43.76 | MSNPGKKSIRLIPPLALRSAATAAASSSMPESSSSKDHNYSRKQKSLGLLCTKFLSLYDRDGAHSIGLDDAASKLGVERRRIYDIVNVLESVGVLARKGKNQYIWKGYGAIPAALQELKEEAVKDNCYGSDANDCTRVSDDEDDDEEGCTNPNTGSHNSINTSSKSSGSTKNDNRREKSLALLAQNFLKLFVCSNVDLISLDDAAKLLIGDANSSAIMRTKVRRLYDIANVLSSMALIEKTYTSDRRKPAFRWLGFKGKYKNESPLSVLPSESMKRKFGTDVTNMSCKTSRIGSSTGLNATWNFNVQKQLKKNNFPIEADENYLERECIEGQKSYQFGPFAPAAMAKVGVSNNTNNVNSVHDWHNLASTYRPQYQNQALRQLFDHYSEAWKSWFSEAAKKPI | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34706175 | 34708963 | + | Conep02aG0191000.1 | Cone2ag0880 | 433347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone2ag0880 | 402 | MobiDBLite | consensus disorder prediction | 135 | 173 | - | - | |
Cone2ag0880 | 402 | FunFam | E2F transcription factor 8 | 37 | 109 | - | - | |
Cone2ag0880 | 402 | SUPERFAMILY | Winged helix DNA-binding domain | 177 | 256 | IPR036390 | - | |
Cone2ag0880 | 402 | SUPERFAMILY | Winged helix DNA-binding domain | 41 | 105 | IPR036390 | - | |
Cone2ag0880 | 402 | Pfam | E2F/DP family winged-helix DNA-binding domain | 43 | 107 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cone2ag0880 | 402 | Pfam | E2F/DP family winged-helix DNA-binding domain | 176 | 255 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cone2ag0880 | 402 | MobiDBLite | consensus disorder prediction | 151 | 169 | - | - | |
Cone2ag0880 | 402 | PANTHER | TRANSCRIPTION FACTOR E2F | 19 | 378 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER) | |
Cone2ag0880 | 402 | SMART | E2F_TDP_2 | 175 | 255 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cone2ag0880 | 402 | SMART | E2F_TDP_2 | 42 | 107 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cone2ag0880 | 402 | Gene3D | - | 169 | 257 | IPR036388 | - | |
Cone2ag0880 | 402 | Gene3D | - | 37 | 110 | IPR036388 | - | |
Cone2ag0880 | 402 | FunFam | E2F transcription factor-like E2FE | 170 | 257 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone2ag0880 | Cone-Chr2:34706175 | Cone5ag1327 | Cone-Chr5:7825728 | 1.20E-09 | dispersed | |
Cone13ag0116 | Cone-Chr13:694206 | Cone2ag0880 | Cone-Chr2:34706175 | 3.17E-141 | wgd | |
Cone16ag0130 | Cone-Chr16:738356 | Cone2ag0880 | Cone-Chr2:34706175 | 1.47E-226 | wgd | |
Cone19ag0118 | Cone-Chr19:663153 | Cone2ag0880 | Cone-Chr2:34706175 | 3.18E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45739 | PF13041 | PPR_2 | 4.70E-08 | CL0020 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone2ag0880 | K09391 | - | csv:101219210 | 465.692 |