Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0881 ATGGGTGGAAATGGAAAGCACAGGTGGAAATTCTCAATCCATCGGACTCCAACAAGTTCAAAGCTCGAACCGAAAGGACCGCCTAAAGAGTTCCTCTGCCCCATTTCTGGATCTTTAATGGTGGACCCTGTGGTTGTTTCCACAGGCCAGACCTTTGAGCGAGTCTCAGCTCAAGTTTGCAGAGACTTAAACTTTTTTCCCAAGCTTGAAGAAGACGGCTCGAACCCTGATTTCTCCACCATGATCACCAATTTGAACATGAAAACGACGATTCTCAATTGGTGTCACGATTCCGGTACGCCGCCGCCGCGAGCTCCCGATTACTCTGCCGTTGAGAGAATCGTCTGGAGCTTGATCGGCGAGCAGAAACCGGAGCCGAGTCTTAGGGTTTCGGAACGGGAGTTGTTGAAAGGCGTCGCGGAAAAACCGGCGGTGAAGTTCACTCACGCGGCGACGGAGTTAGGTCATCGAGTCAATCACTTCTACTCGAGCTCGGAGGAATCCGTCGTTGTCGGAGCCGGTAGCACGCCGGGAACCCCGCTTCCGTTCACAACTCGACCGACTTGTTACTCGTCATCTTCTTCTGCGTCCTCCTCTGGACTTGTCGAAACAGAAACCCTAATCCCTAATTCCACCTCGTCGGAAGAAGAAGCGAGATTAATCCAGAAGCTTAAAAGCTCCGAAGTGGTTAATCAAGAAGAAGGTGTGATTTCTCTGAGGAAGATCACCAGATCGAACGAGCAAGCTAGGGTTTCTCTCTGTACGCCACTGTTACTCCTAGCTCTGAGAAATCTCATTTCCTCTCGATACGCCGTCGTTCAGGTCAACGCGGTAGCTTCGTTGGTCAACCTCTCGCTCGAGAAACCCAATAAGGTGAAGATCGTACGGTCAGGATTCGTTCCGCCATTGATCGACGTGTTAAAGAGTGGACTCAGTGAGTCACAAGAACACGCTGCCGGCGCGCTCTTCAGCTTAGCTTTAGAAGACGAGAACAAGATGGCGATTGGAGTGCTCGGCGCGTTGCAACCGTTAATGCACGTGCTGAGGTCAGAAAGTGAGCGGACTCGGAATGACTCGGCGCTTTGTTTGTACCATTTGAGTCTGACTCAGAGCAACCGAGTCAAACTCGTTAAACTCGGTGCTGTTCCATCGCTATTATCTATGGTTAAATCAGGCAATTTAGTGAGCCGGGTCTTGTTAATTCTATGTAATTTAGCGGTTTGTCACGAGGCAAGATCCGTCATGCTTGATAGTAATGGAGTGGGGACTTTGGTCGGAATGTTGAGGGGGAACGAGTTGGATTCAGAGTCAACCCGAGAGCACTGTGTGGCGGCACTTTATGCACTGAGTCATGGTGGGTTTAGGTTTAAAGGGTTGGCCAAGGAGGCAAGAGCGGTGGAGGTGTTGAGGGAGGTGGAAGAGAGAGGCAGTGAGAGAGCCAGAGAGAAGGCGAAGAGGATTTTGCAGATGATGAAAGGGAGAGAACAGAGGGATGACGAGTTCGAGCGGTTGAATGAATCGGCTCTCGACTCGGATGAACTCGGTTGGACTTGCAACCGAGTTGGAGTTGGTGAGAAAAACGCAAACTCAACCAATTTTTAA 1602 50.5 MGGNGKHRWKFSIHRTPTSSKLEPKGPPKEFLCPISGSLMVDPVVVSTGQTFERVSAQVCRDLNFFPKLEEDGSNPDFSTMITNLNMKTTILNWCHDSGTPPPRAPDYSAVERIVWSLIGEQKPEPSLRVSERELLKGVAEKPAVKFTHAATELGHRVNHFYSSSEESVVVGAGSTPGTPLPFTTRPTCYSSSSSASSSGLVETETLIPNSTSSEEEARLIQKLKSSEVVNQEEGVISLRKITRSNEQARVSLCTPLLLLALRNLISSRYAVVQVNAVASLVNLSLEKPNKVKIVRSGFVPPLIDVLKSGLSESQEHAAGALFSLALEDENKMAIGVLGALQPLMHVLRSESERTRNDSALCLYHLSLTQSNRVKLVKLGAVPSLLSMVKSGNLVSRVLLILCNLAVCHEARSVMLDSNGVGTLVGMLRGNELDSESTREHCVAALYALSHGGFRFKGLAKEARAVEVLREVEERGSERAREKAKRILQMMKGREQRDDEFERLNESALDSDELGWTCNRVGVGEKNANSTNF 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34729517 34731406 + Conep02aG0191100.1 Cone2ag0881 433348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0881 533 ProSiteProfiles U-box domain profile. 26 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0881 533 Gene3D - 210 490 IPR011989 -
Cone2ag0881 533 Pfam Armadillo/beta-catenin-like repeat 289 326 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 Pfam Armadillo/beta-catenin-like repeat 329 367 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 380 420 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 SUPERFAMILY ARM repeat 219 491 IPR016024 -
Cone2ag0881 533 SUPERFAMILY RING/U-box 16 100 - -
Cone2ag0881 533 SMART Ubox_2 30 94 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0881 533 SMART arm_5 328 368 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 SMART arm_5 287 327 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 SMART arm_5 408 451 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 SMART arm_5 369 407 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 99 IPR013083 -
Cone2ag0881 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515(InterPro)
Cone2ag0881 533 MobiDBLite consensus disorder prediction 1 27 - -
Cone2ag0881 533 PANTHER U BOX DOMAIN-CONTAINING 22 492 - -
Cone2ag0881 533 Pfam U-box domain 28 94 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0881 533 FunFam RING-type E3 ubiquitin transferase 215 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0881 Cone-Chr2:34729517 Cone11ag1246 Cone-Chr11:9316383 1.53E-09 dispersed
Cone13ag0120 Cone-Chr13:709968 Cone2ag0881 Cone-Chr2:34729517 1.27E-127 wgd
Cone16ag0900 Cone-Chr16:9344124 Cone2ag0881 Cone-Chr2:34729517 1.18E-114 wgd
Cone16ag0127 Cone-Chr16:718916 Cone2ag0881 Cone-Chr2:34729517 2.02E-241 wgd
Cone19ag0122 Cone-Chr19:685798 Cone2ag0881 Cone-Chr2:34729517 2.28E-120 wgd
Cone2ag0153 Cone-Chr2:794797 Cone2ag0881 Cone-Chr2:34729517 8.37E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0881 - - - 0.0