Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0889 ATGGGCGAAGCCAAGCGGAAAAGAGGCCGCAAACCCAAAAATGCTATCACAGAAGCCCTAGATTTCCCTCCTCCCACTACTTCCACCACAGTCGCTACCATGGACGACGTTTTCTCCGTCACCAACGTCGAAGTCATCGACCCAACCTCCACTTCGTCTCGCCACAGCCGCCGTGGTCGACCAAGAAAGCTCCCTAAGCATTCCGACAAGAAGCCGGACAAGGCCCCGCACCTGTCTTCGTCCAGACGTGTCACCCGCTCTGTTGAAAACGGCGAGTTCAAGGTCTCCGGCGACGTGGTGGCCCACACTACGGTCTCCGCCGACGGAGCAGAACCGGGGTGGGCTGGGGTGGCGAGGGTGGTTCCTGTAATGGACGCGGTGGTGAAGGTGTTTTGTGTTCACACGGAGCCGAATTTCTCTTTGCCATGGCAGAGGAAGAGACAGTACAGTTCGAGTAGTAGTGGGTTTGTGATCGGAGGGAGGAGGGTTCTTACTAATGCACATTCTGTAGAGCATTATACTCAGGTGAAGCTTAAGAAACGTGGGTCTGATACTAAGTACTTGGCTACTGTTCTTGCCATTGGAACTGAGTGTGATATCGCTCTACTCACTGTGGATGATGATGAGTTTTGGGAAGGAGTATCACCTGTAGAATTTGGAGACTTACCTGCACTACAAGACGCCGTGACTGTTGTGGGTTATCCAATTGGAGGAGATACGATTTCTGTTACAAGTGGTGTTGTTTCTCGGATAGAGATCCTTTCTTATGTTCATGGGTCTACTGAGCTTCTGGGTTTGCAGATAGATGCTGCCATAAACTCTGGGAACTCAGGTGGACCTGCCTTTAACGATAAAGGCAACTGTGTGGGCATTGCATTTCAGTCTCTTAAACACGAAGATGTGGAGAATATAGGATATGTAATACCAACGCCTGTCATCATGCATTTTATCCACGATTATGAGAAAAATGGAGCATATACAGGATTTCCAATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCAGATCTTCGAGTAGCCATGGGTATGAAACCTAACCAGAAAGGTGTTCGCATTAGAAGGATAGATCCAACAGCCCCAGAATCTCAGGTCTTGGAACCGTCAGATATAATTCTCAGCTTTGATGGGGTCGATATTGCAAATGACGGAACAGTTCCTTTTCGGCATGGAGAGCGTATAGGTTTTAGTTACCTTGTATCTCAGAAATATACTGGAGATAATGCCGCAATAAAAGTTTTGAGGAATCATAAGACTCTTAATTTTAACATCAAATTAGCTGGCCATAAGAGGCTTATACCGGCACATAACAAGGGCATGCCTCCCTCATATTTTATTATTGCAGGATTCGTTTTCACGACTGTATCTGTTCCTTATCTCCGTTCTGAGTATGGAAAGGATTACGAGTATGAAGCTCCTGTCAAACTCTTGGACAAACTTTTGCATTCCATGCCGCAATCACCAGATGAGCAACTCATTGTGGTTTCTCAGGTGCTTGTGGCTGACATTAACATTGGATATGAAGACATTGTTAACACCCAGGTTCTTGCTCTCAATGGTAAGCCAGTAAAGAATCTGAAAAACTTGGCGGCCATGGTTGAAAGCTGTGATGATGAGTTTTTGAAGTTCGATTTAGAATACCAACAGATAGTTGTTCTCCGAACAAGCACGGCCAAAAAGGCAACAGTCGATATTCTCACGACTCACTGCATACCTTCGGCAATGTCCGAAGATCTCATGACTTAA 1764 46.37 MGEAKRKRGRKPKNAITEALDFPPPTTSTTVATMDDVFSVTNVEVIDPTSTSSRHSRRGRPRKLPKHSDKKPDKAPHLSSSRRVTRSVENGEFKVSGDVVAHTTVSADGAEPGWAGVARVVPVMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIALLTVDDDEFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIHDYEKNGAYTGFPILGVEWQKMENPDLRVAMGMKPNQKGVRIRRIDPTAPESQVLEPSDIILSFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDNAAIKVLRNHKTLNFNIKLAGHKRLIPAHNKGMPPSYFIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLIVVSQVLVADINIGYEDIVNTQVLALNGKPVKNLKNLAAMVESCDDEFLKFDLEYQQIVVLRTSTAKKATVDILTTHCIPSAMSEDLMT 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34779935 34784765 + Conep02aG0191900.1 Cone2ag0889 433356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0889 587 Gene3D - 438 587 IPR046449 -
Cone2ag0889 587 Pfam PDZ domain 349 432 IPR001478 GO:0005515(InterPro)
Cone2ag0889 587 SUPERFAMILY Trypsin-like serine proteases 123 324 IPR009003 -
Cone2ag0889 587 SUPERFAMILY PDZ domain-like 355 437 IPR036034 GO:0005515(InterPro)
Cone2ag0889 587 Gene3D - 107 210 IPR043504 -
Cone2ag0889 587 MobiDBLite consensus disorder prediction 66 80 - -
Cone2ag0889 587 FunFam protease Do-like 9 212 322 - -
Cone2ag0889 587 PANTHER - 35 586 - GO:0004252(PANTHER)
Cone2ag0889 587 Pfam PDZ domain 439 584 IPR041517 -
Cone2ag0889 587 PRINTS HtrA/DegQ protease family signature 262 279 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone2ag0889 587 PRINTS HtrA/DegQ protease family signature 155 167 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone2ag0889 587 PRINTS HtrA/DegQ protease family signature 225 249 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone2ag0889 587 PRINTS HtrA/DegQ protease family signature 183 203 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone2ag0889 587 PRINTS HtrA/DegQ protease family signature 371 383 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone2ag0889 587 Gene3D - 211 322 IPR043504 -
Cone2ag0889 587 FunFam Protease Do-like 9 104 210 - -
Cone2ag0889 587 Gene3D - 329 437 IPR036034 GO:0005515(InterPro)
Cone2ag0889 587 Pfam Trypsin-like peptidase domain 154 291 - -
Cone2ag0889 587 MobiDBLite consensus disorder prediction 1 30 - -
Cone2ag0889 587 MobiDBLite consensus disorder prediction 47 90 - -
Cone2ag0889 587 CDD PDZ_serine_protease 330 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0889 K25897 - - csv:101219688 989.564
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0476 Cone-Chr17:2293634 Cone2ag0889 Cone-Chr2:34779935 1.42E-173 dispersed
Cone1ag0833 Cone-Chr1:54149382 Cone2ag0889 Cone-Chr2:34779935 1.05E-42 dispersed
Cone20ag0908 Cone-Chr20:6550003 Cone2ag0889 Cone-Chr2:34779935 2.05E-173 dispersed
Cone2ag0889 Cone-Chr2:34779935 Cone5ag0984 Cone-Chr5:4221841 3.32E-149 dispersed
Cone16ag0121 Cone-Chr16:685432 Cone2ag0889 Cone-Chr2:34779935 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42