Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0904 ATGGAGACCAAAACGGAGGCGATACTAAGAGAGTACAAGCGAGCAGTGTCATGGTCGAAGAAGTACTTAGTCTCATCTGGTGCAAAAATCAAAGGAGAAGGAGAAGAAGATTGGAGTGCTGATCTGTCTCAGCTCTTCATTGCCTCCAAATTTGCCAATGGAAGACATAGCAGGATTTACAGAGGACTTTACAAGCAAAAAGATGTTGCTATTAAGATGATAAGTCAGCCTGAAGAGGATGCAAATTTGGCTTCTATCCTAGAAAATCACTTCATTTCTGAAGTGGCCTTGATCTTTAGGCTGAGCCACCCCAATATCATCACTTTTATTGCGGCTTGTAAGAATCCACCCGTGTTCTGTATCATAACAGAGTACATGGCGGGAGGTTCGTTAAGAAAATATCTTCACCATCAAGAGCCAAATTCGGTCCCACACAGCCTAATTTTGAAACTAACACTAGATATATCCCGTGTGATGCAATACCTTCATTCCCAAGGAATACTTCATAGGGATCTCAAATCCGAGAATCTGCTTCTGGGTGATGATATGTGTGTTAAGAATTCGAATGTAGAAGAAGTGAAAAAGGGATTTACTGGAACTTACCGTTGGATGGCACCAGAAATGATCAAAGAGAAACACCATACAAAAAAAATCGATGTTTATAGCTTTGGGATTGTTCTTTGGGAGCTTTTAACTGCATTGATTCCGTTCGATAACTTAACTCCCGAACAAGCTGCATTTGCTGTTCACCAGAAGAATGCAAGGCCGCCATTACCGTCTGAGTGTCCTTTGGCATTTAGTCATTTGATCAATAGATGTTGGTCAAGTAATGCGGATAAGAGACCGAATTTCGACGAGATTGTTTTGATTCTTGAGAGTTATGCAGAGTCACTTGAGAAGGATCACCACTTTTTCTCATCTTACAAACCTACGGAACACACTTTTCTCCGGTGCTTGCCGAAATGTATTGCCGGCCAAAGGTCAGCTTCTTTAAGGGTTTAG 1002 41.52 METKTEAILREYKRAVSWSKKYLVSSGAKIKGEGEEDWSADLSQLFIASKFANGRHSRIYRGLYKQKDVAIKMISQPEEDANLASILENHFISEVALIFRLSHPNIITFIAACKNPPVFCIITEYMAGGSLRKYLHHQEPNSVPHSLILKLTLDISRVMQYLHSQGILHRDLKSENLLLGDDMCVKNSNVEEVKKGFTGTYRWMAPEMIKEKHHTKKIDVYSFGIVLWELLTALIPFDNLTPEQAAFAVHQKNARPPLPSECPLAFSHLINRCWSSNADKRPNFDEIVLILESYAESLEKDHHFFSSYKPTEHTFLRCLPKCIAGQRSASLRV 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34854307 34856725 + Conep02aG0193400.1 Cone2ag0904 433371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0904 333 PRINTS Tyrosine kinase catalytic domain signature 218 240 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 PRINTS Tyrosine kinase catalytic domain signature 199 209 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 PRINTS Tyrosine kinase catalytic domain signature 123 136 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 PRINTS Tyrosine kinase catalytic domain signature 262 284 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 SMART serkin_6 45 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 Gene3D Transferase(Phosphotransferase) domain 1 128 316 - -
Cone2ag0904 333 CDD STKc_MAP3K-like 54 291 - -
Cone2ag0904 333 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Cone2ag0904 333 FunFam Serine/threonine-protein kinase isoform 1 35 127 - -
Cone2ag0904 333 ProSiteProfiles Protein kinase domain profile. 45 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 Pfam Protein tyrosine and serine/threonine kinase 49 289 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0904 333 SUPERFAMILY Protein kinase-like (PK-like) 35 289 IPR011009 -
Cone2ag0904 333 PANTHER SERINE-THREONINE PROTEIN KINASE 41 292 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0137 Cone-Chr13:792263 Cone2ag0904 Cone-Chr2:34854307 3.51E-173 dispersed
Cone16ag0108 Cone-Chr16:632936 Cone2ag0904 Cone-Chr2:34854307 3.35E-212 dispersed
Cone19ag0138 Cone-Chr19:746743 Cone2ag0904 Cone-Chr2:34854307 2.36E-178 dispersed
Cone1ag0032 Cone-Chr1:202811 Cone2ag0904 Cone-Chr2:34854307 1.23E-115 dispersed
Cone2ag0904 Cone-Chr2:34854307 Cone5ag1835 Cone-Chr5:12907493 1.61E-115 dispersed
Cone2ag0900 Cone-Chr2:34824127 Cone2ag0904 Cone-Chr2:34854307 3.69E-56 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82635 PF01590 GAF 1.80E-12 CL0161 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0904 - - - 0.0