Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0905 ATGCCTGGAATTGTATCTGATGAAGTTAAAAAAGAAGAACAACAAGAGATTGTGAATGAGTCAAATGGTGGTAGTAAATCCCCAGATAATAATAACAGAAACAATAACAATAACATGGGTTTGAATCCGGGAACTTCTTCTCAACATGTTCATCATGATGATGGGATAGTAGTAGACACTTCGATTGAAAAGCTTTACGAGAACTTATGCGATATGCATAGCTCGGATCAATCCCCTTCAAGACATAGTGGTATTGGATCTGATGCAGAGGAATCTAAGATCGATTCCGAGCTCCGGAATCTTGTTGGAGGAGAGATGAGGGAGGTGGAGATAATCAAAGAAGAGGTGGAAAAACCTGAAAGTGAGGATAATCTTCATAGCAATTCTTCTTCATCTGAGAAGGGAAGTAATTCATCTCCATCTCCGACAAAACCCGAAAAGAAGAATGGGGTGACGAAGAAAGATTCTGAAATGGGAACATCATCATCATCTCCACTGAAACCAAGTCCTAGTAAGGGTCCAGAGAAAAAGAAGCTGCCTAGAAATGTTCAAAAGGAGAAGACTCCAAAAAAGCAAAGCCCGACGACTACTACTACTACTACTCTTGTGAAGAAACCAAGGAATTCTCCGTTACCCAATGGAAGCAATAATTTGAGTCCAGACTTGGGTCCCTTTTTACTCAAGCAAGCAAGGAATCTGATCTCTTCTGGGGATAGTCCACAGAAAGCACTAGAACTAGCTCTACGAGCTTCAAAATCGTTTGAAACGGCCTCGAATGGGAAACCTAGTTTAGAATTGGTGATGTGTTTACACGTAACGGCTGCTATCTACTGCAGCCTAGGACAATATAACGATGCGATTCCTCTTCTAGAACATTCCATAGAGATTCCATATCCCGAGGAAGGTCAAAACCAAGAACATGCTCTTGCTAAATTTGCCGGGCACATGCAGTTAGGCGATACCTACGCGATGCTGGGGCAGTTGGAGAATTCGATAAGTTGTTATTCAACCGGACTAGAAGTCCAAAGACAAGCTCTTGGACCAACTGACCCAAGAGTCGGGGAAACATGCCGGTACTTAGCCGAGGCTCATGTCCAGGCCCTTCAGTTCGACAAGGCTGAGAGGTTTTGCCAGATGGCGCTCGACATTCATAAGGAGAATCATTCTCTAGCTTCTTTAGAAGAAGCAGCTGATCGTAGACTGATGGGTTTGATATGTGAGACAAAGGGTGATCATGAGGCTGCCTTAGAACATCTTGTTTTAGCGAGCATGTCCATGGTTGCAAATGGGCAAGAAATGGAAGTGGCTGTAGTGGATTGTAGCATAGGAGATACCTATTTGTCCTTGTCTAGATACGACGAGGCTGTTTTCGCCTATCAGAAAGCGCTCACGGTTTTCAAGACGACTAAAGGGGAGAACCATCCATCCGTGGGATCAGTTTTTGTTCGCCTGGCAGAGTTGTATAACAAGACAGGGAAAGTACGTGAGTCGAAATCATATTGTGAGAATGCGCTCCGTATCTATGAAAAGCCCATCCCTGGTATATCCAGTGAGGAGATTGCAAGTGGGTTAACTAACGTTTCCGCGATTTACGAATCCATGAACGAGCTCGAGCACGCTCTTAAGTTGTTGGAAAAGGCACTGAGGATTTATAATAGCGCGCCAGGTCAACAAAATATGGTTGCCGGTATCGAGGCTCAGATGGGTGTGATGTATTATATGTTGGGGAACTATTCGGCTTCATATGATTTCTTTAAAAATGCTATATCTAAGCTAAGGGCAATTGGGGAGAAGAAATCACCTTTTTTTGGGATTGCGCTTAACCAAATGGGGCTTGTTTGTGTTCAACGTTATGCCATAGATGAGGCGATTGAATTGTTTGAAGAAGCCCGGACTGTGTTTGAACAAGAGTGCGGGCCTTATCATACCGATACTCTCGGGGTTTACAGCAATCTTGCTGGGACCTACGATGCAGTTGGCAGGTTGGATGAGGCTGTTGAGATATTGGAATATGTGGTTGGGATGAGAGAAGAGAAGCTTGGGACAGCAAGCCCAGAGGTGGACGATGAGAAGAGGAGGTTGGCCGAGTTGTTGAAAGAGACGGGAAGAGTCCGGAACCGGAAAGTGAGGTCGCTTGAGAATCTACTTGATTCTAATTCTCAGTCTGTACAACAAAGTAGTAGCATTTTGGTTTGA 2196 44.17 MPGIVSDEVKKEEQQEIVNESNGGSKSPDNNNRNNNNNMGLNPGTSSQHVHHDDGIVVDTSIEKLYENLCDMHSSDQSPSRHSGIGSDAEESKIDSELRNLVGGEMREVEIIKEEVEKPESEDNLHSNSSSSEKGSNSSPSPTKPEKKNGVTKKDSEMGTSSSSPLKPSPSKGPEKKKLPRNVQKEKTPKKQSPTTTTTTTLVKKPRNSPLPNGSNNLSPDLGPFLLKQARNLISSGDSPQKALELALRASKSFETASNGKPSLELVMCLHVTAAIYCSLGQYNDAIPLLEHSIEIPYPEEGQNQEHALAKFAGHMQLGDTYAMLGQLENSISCYSTGLEVQRQALGPTDPRVGETCRYLAEAHVQALQFDKAERFCQMALDIHKENHSLASLEEAADRRLMGLICETKGDHEAALEHLVLASMSMVANGQEMEVAVVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTTKGENHPSVGSVFVRLAELYNKTGKVRESKSYCENALRIYEKPIPGISSEEIASGLTNVSAIYESMNELEHALKLLEKALRIYNSAPGQQNMVAGIEAQMGVMYYMLGNYSASYDFFKNAISKLRAIGEKKSPFFGIALNQMGLVCVQRYAIDEAIELFEEARTVFEQECGPYHTDTLGVYSNLAGTYDAVGRLDEAVEILEYVVGMREEKLGTASPEVDDEKRRLAELLKETGRVRNRKVRSLENLLDSNSQSVQQSSSILV 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34859692 34862893 + Conep02aG0193500.1 Cone2ag0905 433372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0905 731 Gene3D Tetratricopeptide repeat domain 423 602 IPR011990 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 312 345 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 521 554 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 478 511 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 267 300 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 646 679 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 354 387 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 604 637 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SMART tpr_5 436 469 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 SUPERFAMILY TPR-like 242 678 IPR011990 GO:0005515(InterPro)
Cone2ag0905 731 MobiDBLite consensus disorder prediction 69 222 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 86 124 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 71 85 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 18 49 - -
Cone2ag0905 731 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 48 722 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 1 56 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 125 146 - -
Cone2ag0905 731 Gene3D Tetratricopeptide repeat domain 215 422 IPR011990 GO:0005515(InterPro)
Cone2ag0905 731 MobiDBLite consensus disorder prediction 189 222 - -
Cone2ag0905 731 MobiDBLite consensus disorder prediction 171 188 - -
Cone2ag0905 731 Pfam Tetratricopeptide repeat 316 385 - -
Cone2ag0905 731 Pfam Tetratricopeptide repeat 479 552 - -
Cone2ag0905 731 Pfam Tetratricopeptide repeat 605 672 - -
Cone2ag0905 731 ProSiteProfiles TPR repeat profile. 436 469 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 MobiDBLite consensus disorder prediction 1 17 - -
Cone2ag0905 731 Gene3D Tetratricopeptide repeat domain 634 730 IPR011990 GO:0005515(InterPro)
Cone2ag0905 731 MobiDBLite consensus disorder prediction 155 169 - -
Cone2ag0905 731 Coils Coil 534 554 - -
Cone2ag0905 731 ProSiteProfiles TPR repeat profile. 521 554 IPR019734 GO:0005515(InterPro)
Cone2ag0905 731 Pfam Tetratricopeptide repeat 441 464 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0905 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0905 Cone-Chr2:34859692 Cone9ag0878 Cone-Chr9:4278658 2.99E-230 dispersed
Cone16ag0107 Cone-Chr16:622001 Cone2ag0905 Cone-Chr2:34859692 0 wgd
Cone2ag0132 Cone-Chr2:687679 Cone2ag0905 Cone-Chr2:34859692 4.51E-266 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48