Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0917 ATGGGTTGCATCCAAATCTCGAGTTTTCTTCTTCTCCTTCTTCTCGCTATATCTCTAGCAGATAATTCAATATCGGTTTCATCAGCTTCTTATCAACTTCTAAGAATCAAATTACGGCTAGTTGATCCTTTGCAAGTACTCAAAAGCTGGTCCCCAAATTCTCATACGTGTACTTGGCATGGCCTTACATGTTCCGATGATCAAACTCGGATAATCGGGTTAAACCTATCCCGGTCTGGATTATCCGGTTCTATCTGGAGTGAGCTATATCATGTTTCTTCACTTGAAACCATAGACTTATCTTCAAATTCCCTAAGCGGATCGATCCCATCCGAGTTTAGCCAACTCCAAAATCTAAGCATACTGATGTTGTATTCAAATAATCTATCCGGAATTATTCCAGATGAAATCGGTTTTTTGAACAACTTACAAGTCCTTAGAATTGGTGATAACATGTTATCAGGTGAGATTAGTCCAAGTATCGGAAACTTGACTGGGTTAGGAGTACTGGGTCTTGCTTATTGTCAATTTAACGGAACTATTCCAGGCGAAATTGGTAATTTGAAGAATCTAGTATCTCTTGATCTACAAAAGAATATCCTTAGTGGTACCATCCCGGAAGAGATTCTTCGAGGCTGCAAGGATCTCCAAAACTTCGCTGTATCGAACAATATGCTCGTAGGGAATATTCCTTCTTCGATTGGAATGCTCAAGTCACTGAAGATACTCAATCTAGCAAACAATAGCCTTTCTGGATCAATCCCGATTTCGCTAAGTCAACTCTCGAACTTGACTTACATCAACTTGCTTGGAAATAGACTTCACGGCGAGATTCCATCTGAGCTTAACCATTTGTTTCGGATCGAGAAACTCGACTTATCGAACAACAATCTTTCCGGAATCATATCCCTTCAAGTTACTCAACTCGAGAATCTTGAAGAGTTGGTCTTGTCGGATAATGCTTTGACCGGAATGATCCCGGAAATATTTTGTTCCGAAAACTCAAGCCTCAAACAACTACTTTTAGCTCGAAACAAGCTTTCTGGAAATTTTCCATTGGAAGTACTCAACTGCCCTTCTCTACAACAGCTAGACCTTTCCGATAACATCTTTGAAGGAGAGCTCCCTTCGGATTTGTCCAAGCTTGGGAAATTAACCGATCTTCTACTCAACAATAATAGCTTTTCTGGAAAACTACCAGCCGAAATCGGAAACTTAACTGACTTGGAGAATCTATACCTCTTTGACAACAAATTCATAGGTAGTATTCCAATAGAGATTGGAAAGCTAAAGAAGCTAACCACCTTCTACCTTTATGATAACCAATTCTCAGGTTATATACCGAGTGAGTTAACAAACTGTTCGAGCTTGACCGCTGTTGATTTCTTCGGAAACCATTTTGTGGGCCGGATTCCGGCAACAATAGGGAGGTTAGAGAATCTAGTCGTGCTTCAACTAAGGCAGAACGACTTTACGGGTCCAATCCCGCCCAGTTTGGGGTATTGTAGAAAGCTTATGTTATTGGCTTTGGCCGATAACAAACTTTCTGGATCAGTGCCACCTACTTTCCGATTCCTTTCGGAACTTAGCACTATTACTCTTTACAACAACTCATTTGAAGGGCCTCTTCCTTCCTCTCTCTCACTTCTCAAGAGCTTGAAGATCATAAATTTCTCTCATAACAAGTTTAGTGGGAGCATACTTCCTCTCTTAGGCTCAAATCTTCTTACAGCATTGGACTTAACAAACAACAGCTTTTCAGGTTTTCTTCCTTCTGCACTATCCATGTCCAGGAATTTGACCCGGGTCCGCCTTGCACATAACAAACTCAACGGTCAAATTCCATCCGAGTTCGGTCAACTCCAAAAGCTCAACTTTCTTGACTTGTCATTCAACAATTTAACAGGAGAAGTTCCAAGTCAACTATCAAATTGTCGAAAAATCGAGCATCTTTTACTTAACAACAATAACTTGATAGGAGCCATTGATCCATGGCTAGGAAGCTTGGAAGAATTGGGTGAGCTTGATTTCTCATCTAACAACTTCAATGGAGAAATTCCGGGTGAGATTGGAAAGTGTTCAAAACTACTTAAACTTTCTCTTCACAACAACAATTTCTCGGGGAAAATTCCAGAAGAGATTGGAAACCTAACTTCTCTTAATGTTCTTGATCTTCAAAGAAACCAGATTTCTGGGTCAATCCCGTTTTCGATCCAACAATGCCAGAAATTATTCGAGTTGAGATTATCGGAAAATCTCTTGACTGGTTCGATCCCATTTGAGCTAGGCCAATTACTTGAGCTGCAAGTAATCATGGACTTGAGCAAAAATCTCTTCTCAGGCAAAATCCCATTGAGTATAGGAAGTCTAATCAAGTTAGAGAGACTCAATCTTTCTTCAAATCATCTAGGAGGAGAAATCCCTTCTTCACTTGGCAAGTTGACAAGTCTTCACATGCTAAACTTATCAAACAATCATCTTCATGGCTTAATCCCTTCCACCTTTGCATCATTCCCACTTAGCTCCTTCTTGGGTAATGAAGAAGATCTATGTGGTCCCCCCTTGTCATTATCTTGTTCGTCAAGGAAGAAGAAGGGGACCCAGTTGTCGAAAACTCAAGTGACAGCGATTGTTGCAGCCATTGTTTTTACTTCAACTGTGATTTGTTCGGTGATGATTTATGCAATGATAAGGATATGGAGGAATTGGAGAAAGGTTTGTAGACTGAGCTCAGAATGTGGAGGAAATGCTAATATTCATGAAGGATATGATGATAATAAATGGGGTTGTAAAGAGTATTGGAAAGTTGGTTCAAATGAGGAGGAGAAGAAGAAGAAAAAAGGTTCTTCTAAGAATGCATGCATTTTTCATGTGAAAATGGATGGACTAGAGACCATGTAA 2901 40.02 MGCIQISSFLLLLLLAISLADNSISVSSASYQLLRIKLRLVDPLQVLKSWSPNSHTCTWHGLTCSDDQTRIIGLNLSRSGLSGSIWSELYHVSSLETIDLSSNSLSGSIPSEFSQLQNLSILMLYSNNLSGIIPDEIGFLNNLQVLRIGDNMLSGEISPSIGNLTGLGVLGLAYCQFNGTIPGEIGNLKNLVSLDLQKNILSGTIPEEILRGCKDLQNFAVSNNMLVGNIPSSIGMLKSLKILNLANNSLSGSIPISLSQLSNLTYINLLGNRLHGEIPSELNHLFRIEKLDLSNNNLSGIISLQVTQLENLEELVLSDNALTGMIPEIFCSENSSLKQLLLARNKLSGNFPLEVLNCPSLQQLDLSDNIFEGELPSDLSKLGKLTDLLLNNNSFSGKLPAEIGNLTDLENLYLFDNKFIGSIPIEIGKLKKLTTFYLYDNQFSGYIPSELTNCSSLTAVDFFGNHFVGRIPATIGRLENLVVLQLRQNDFTGPIPPSLGYCRKLMLLALADNKLSGSVPPTFRFLSELSTITLYNNSFEGPLPSSLSLLKSLKIINFSHNKFSGSILPLLGSNLLTALDLTNNSFSGFLPSALSMSRNLTRVRLAHNKLNGQIPSEFGQLQKLNFLDLSFNNLTGEVPSQLSNCRKIEHLLLNNNNLIGAIDPWLGSLEELGELDFSSNNFNGEIPGEIGKCSKLLKLSLHNNNFSGKIPEEIGNLTSLNVLDLQRNQISGSIPFSIQQCQKLFELRLSENLLTGSIPFELGQLLELQVIMDLSKNLFSGKIPLSIGSLIKLERLNLSSNHLGGEIPSSLGKLTSLHMLNLSNNHLHGLIPSTFASFPLSSFLGNEEDLCGPPLSLSCSSRKKKGTQLSKTQVTAIVAAIVFTSTVICSVMIYAMIRIWRNWRKVCRLSSECGGNANIHEGYDDNKWGCKEYWKVGSNEEEKKKKKGSSKNACIFHVKMDGLETM 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34938611 34941511 - Conep02aG0194700.1 Cone2ag0917 433384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0917 966 SMART LRR_typ_2 237 261 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 309 332 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 717 741 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 92 115 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 140 164 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 188 212 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 621 645 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 790 813 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 116 139 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 430 454 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 382 406 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 669 693 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 814 837 IPR003591 -
Cone2ag0917 966 SMART LRR_typ_2 478 502 IPR003591 -
Cone2ag0917 966 SUPERFAMILY L domain-like 335 636 - -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 573 868 IPR032675 -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 29 141 IPR032675 -
Cone2ag0917 966 Pfam Leucine rich repeat N-terminal domain 33 65 IPR013210 -
Cone2ag0917 966 SMART LRR_sd22_2 717 738 - -
Cone2ag0917 966 SMART LRR_sd22_2 621 647 - -
Cone2ag0917 966 SMART LRR_sd22_2 92 121 - -
Cone2ag0917 966 SMART LRR_sd22_2 261 284 - -
Cone2ag0917 966 SMART LRR_sd22_2 285 314 - -
Cone2ag0917 966 SMART LRR_sd22_2 237 258 - -
Cone2ag0917 966 SMART LRR_sd22_2 188 211 - -
Cone2ag0917 966 SMART LRR_sd22_2 430 459 - -
Cone2ag0917 966 SMART LRR_sd22_2 140 166 - -
Cone2ag0917 966 Pfam Leucine Rich Repeat 623 645 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 576 595 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 792 814 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 288 304 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 552 573 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 673 693 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 384 406 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 311 332 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 696 717 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 360 382 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 480 502 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 719 741 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 816 837 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 599 621 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 PRINTS Leucine-rich repeat signature 814 827 - -
Cone2ag0917 966 PRINTS Leucine-rich repeat signature 288 301 - -
Cone2ag0917 966 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 FunFam Uncharacterized protein 183 278 - -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 142 271 IPR032675 -
Cone2ag0917 966 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 569 863 - -
Cone2ag0917 966 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 26 182 - -
Cone2ag0917 966 FunFam Uncharacterized protein 376 471 - -
Cone2ag0917 966 SUPERFAMILY L domain-like 51 372 - -
Cone2ag0917 966 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 472 568 - -
Cone2ag0917 966 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
Cone2ag0917 966 SUPERFAMILY RNI-like 579 836 - -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 272 374 IPR032675 -
Cone2ag0917 966 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 279 375 - -
Cone2ag0917 966 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 526 901 IPR051716 -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 375 471 IPR032675 -
Cone2ag0917 966 Gene3D Ribonuclease Inhibitor 472 572 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0917 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0090 Cone-Chr16:491304 Cone2ag0917 Cone-Chr2:34938611 9.34E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012271 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 29