Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0922 ATGCCTGTAGAACATCATTCATGGAGAACAACAACAGCTGTAATCCTCCTCTGTTTCCTCACCTTGTCAACATCCAAACCAGCCTCTGCCCTTAACGACCAAGGCCAAGCTCTCCTCTCATGGAAGACCACCCTAAATGGGTCCCACCTCCAATCCTTAACAAGTTGGAACCCAAGTGATGATACCCCATGTGGATGGTTTGGCATCACCTGCAACTCCGACAAACAAGTAACAGAGTTCGACTTGAACAACTTGGATTTAATGGGTAAGCCTCCTTCCAACTTCACTTCCCTCTTGTCCTTAACCAAGCTTGTGTTAACAGCAGCAAATCTCACTGGCTCAGTCCCTAAAGAAATAAGCCTCCTTAAACAACTTACCAAACTTGACTTGAGCCAGAACTCATTGACTGGCTCAGTCCCAATTGAGATTTGCTCTTTGCTCAAGCTTGAAGAACTCCACCTCAACTCAAATGGGCTTGAAGGCCCAATCCCATCTCAAATTGGTGACCTCTCTAGCTTGAAACGGTTCATTCTCTATGACAATCAACTTGGAGGCGAGATTCCTAGTACTATTGGAAACTTGAAGAATCTTGAGGTCGTTAGAGCTGGTGGGAATAAGAATCTTCAAGGCCCTTTGCCTCGAGAGATTGGTAACTGCACCAACTTAGTTTTTCTCGGCTTGGCCGAAACAAGTATATCGGGTTCATTACCGTCCAGTCTCAGACTTCTCCAAAACCTGCGAACACTTGCGATTTATACCTCGCTTTTGTCCGGAGAAATCCCGGCGGAACTCGGAAATTGCACTCAGCTCGAAAACATCTATTTGTATGAAAACTCGATCTCGGGGTCAATCCCGAAGAGCTTCCGCAAGCTTCGGAAACTTCAGAATTTACTTCTATGGAAGAATAACTTGGAATTACAGTTGAGTGTAAATCAGATTTCAGGGGAGATTCCGGCTCAAATAGGGAACTGTTTCGGGATTACTCATATGGAGCTCGATAACAATCGGATTTCCGGTTCGATTCCGGAAGAGTTGGGAAATCTTGTAAATTTGACCGTTTTGTTCTTGTGGGCGAATAAGCTCGAGGGGAATATTCCGGGTTCGATTTCAAACTGTCGGAATCTAGAAGGTGTGGATTTGTCCCAGAATGAATTGGTGGGGTCCATTCCGAAGGGGATTTTTCAGCTCAAGAAGCTGAACAAGCTTCTGCTGCTTGATAACACTCTTTCTGGCGAAATTCCGGTTGAGATTGGGAACTGCTCAGCTCTGATTCGGTTGAGAGCGAGTAAGAACAAGCTCACTGGATCCATTCCGGCTCAAATTGGGAACCTGAAGAATTTGAATTTCTTGGATCTAGGAGAGAACCGGCTCACCGGATTGATTCCCGAAGAGATCTCCGGCAGCCGGAATCTGACGTTTCTCGACCTGCATTCCAACTCGATTTCTGGAAATTTGCCGGGAACACTTAACCAGCTTGTTTCCCTCCAATTCGTTGATTTGTCCAACAATGAAATCGAAGGGATTCTGAATCCGAATCTCGCATCATTGAGCTCGCTGACCAAATTTGCTCTAGCGAATAACCGATTCACCGGTACGATTCCGAGTCAACTGGGATCCTGCTTCGTGCTGCAACTGCTCGACCTCAGTGTAAATCAGCTGACAGGTAATCTTCCGTCGAGCTTGGGGAATATTCCGGTGCTTGAGATCGCACTTAACCTAAGCTACAACCGATTCACCGGCGAGATTCCGAAAGAGTTCACCAACTTAGACAAGCTCGGAATCTTAGATCTCTCTCATAATGAGCTAACCGGAGATCTTCAATTCCTCGCCGATATGCAAAATATCGTGGTGCTCAACGTTTCGCACAACAATTTCTCCGGCAAGGTGCCGGACTCACCGTTCTTCTCAAAGCTTCCATTAAGCGATCTCTCCGGAAATCCAGATCTCTGCTTGACCGGCAAACAATGCACCGCCGAAAAGCACGGAAATGCCTCCCGGCGCACCGTAGCAGCTCACATAGCGATGGTGGTGCTCCTATGCACGGCGTGCGCACTGCTCCTTGCGGCCTTCTACATCGTTCTCCGATCCAAAAACGTGGGCCTAACAGGCTTCCCTGAGGCTCATGGCGAAGACGGCTTCACAAGTGACGTGGAGATGGGACCCAGCTGGGAAGTAACTCTGTATCAGAAACTCGACCTGTCAATTTCCGACGTGGAAAAATGCTTAACAGCTGGCAACGTGATAGGACGTGGAAGATCAGGCGTGGTATATCGAGCAGCAATCCCATCAGGTCTAACAATTGCCGTCAAGCGATTCACCGAAACCGAGAAATTCTCCGTCTCGGCCTTCTCATCCGAAATCTCCACGTTAGCACGAATCCGCCACCGAAATATCGTCCGGTTACTCGGATGGGCAGCGAACCGGAAAACAAAACTGCTATTTTACGACTACTTGCCAAACGGAAGTTTAGGAGGGTTGCTGCATGGAGCAGGGCGCATAGGATTACTCGAGTGGGAAACGCGGTTTAAGATAGCATTAGGCGTTGCAGAAGGGTTGGCTTATTTGCACCATGATTGCGTGTCGGCTATTCTGCACCGAGACGTTAAGGCTGATAACATATTGTTAGGGGACCGATACGAGCCTTGCTTGGCCGATTTCGGGCTCGCTAGATCGGTCGAAGACGACCGATATGGTTCTTTGTCGGCCAACCCACAATTTGCCGGGTCTTATGGTTACATGGCTCCAGAGTATGGTTGTTGTATGCTAAGAATTACTGAGAAAAGCGACGTGTTTAGCTACGGAGTCGTGCTATTAGAGATCATAACCGGTAAAAAACCGGTCGATCCATCATTCCCAGAAGGTTCCCAACACATTGTTCAGTGGGTCCGGGATCACTTAAAGAGCAAGAGGGACCCAGTTGAGATACTAGATCCCAAGCTTCAAGGCCATCCAGATACACAAATTCAAGAGATGGTTCAAGCTCTTGGAATATCTCTCCTTTGTACGAGCAATCGGGCAGATGACCGCCCGACGATGAAAGATGTTGCAGCATTATTGGTCGAAGTCCAGCCCAACTTGCTCGGAAATGAGGCTGCTCACAACAAGCCCAACAACAACAAATCCTCGAAAAGATTAGAAAGTATTACTCCTCTATTTTCGACATCCTCGTCGGTCGTCCCGGCCCATTTGCTACGTCTTCAAGGATCATCTCATTGTTCGTTCACTTACTCTTCTTCCTCAACCGGTTATCCTTCGCAAAATCAATGA 3267 47.69 MPVEHHSWRTTTAVILLCFLTLSTSKPASALNDQGQALLSWKTTLNGSHLQSLTSWNPSDDTPCGWFGITCNSDKQVTEFDLNNLDLMGKPPSNFTSLLSLTKLVLTAANLTGSVPKEISLLKQLTKLDLSQNSLTGSVPIEICSLLKLEELHLNSNGLEGPIPSQIGDLSSLKRFILYDNQLGGEIPSTIGNLKNLEVVRAGGNKNLQGPLPREIGNCTNLVFLGLAETSISGSLPSSLRLLQNLRTLAIYTSLLSGEIPAELGNCTQLENIYLYENSISGSIPKSFRKLRKLQNLLLWKNNLELQLSVNQISGEIPAQIGNCFGITHMELDNNRISGSIPEELGNLVNLTVLFLWANKLEGNIPGSISNCRNLEGVDLSQNELVGSIPKGIFQLKKLNKLLLLDNTLSGEIPVEIGNCSALIRLRASKNKLTGSIPAQIGNLKNLNFLDLGENRLTGLIPEEISGSRNLTFLDLHSNSISGNLPGTLNQLVSLQFVDLSNNEIEGILNPNLASLSSLTKFALANNRFTGTIPSQLGSCFVLQLLDLSVNQLTGNLPSSLGNIPVLEIALNLSYNRFTGEIPKEFTNLDKLGILDLSHNELTGDLQFLADMQNIVVLNVSHNNFSGKVPDSPFFSKLPLSDLSGNPDLCLTGKQCTAEKHGNASRRTVAAHIAMVVLLCTACALLLAAFYIVLRSKNVGLTGFPEAHGEDGFTSDVEMGPSWEVTLYQKLDLSISDVEKCLTAGNVIGRGRSGVVYRAAIPSGLTIAVKRFTETEKFSVSAFSSEISTLARIRHRNIVRLLGWAANRKTKLLFYDYLPNGSLGGLLHGAGRIGLLEWETRFKIALGVAEGLAYLHHDCVSAILHRDVKADNILLGDRYEPCLADFGLARSVEDDRYGSLSANPQFAGSYGYMAPEYGCCMLRITEKSDVFSYGVVLLEIITGKKPVDPSFPEGSQHIVQWVRDHLKSKRDPVEILDPKLQGHPDTQIQEMVQALGISLLCTSNRADDRPTMKDVAALLVEVQPNLLGNEAAHNKPNNNKSSKRLESITPLFSTSSSVVPAHLLRLQGSSHCSFTYSSSSTGYPSQNQ 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34990626 34995010 - Conep02aG0195600.1 Cone2ag0922 433389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0922 1088 ProSitePatterns Protein kinases ATP-binding region signature. 748 770 IPR017441 GO:0005524(InterPro)
Cone2ag0922 1088 FunFam Nuclear pore complex protein NUP107 31 183 - -
Cone2ag0922 1088 Pfam Protein kinase domain 745 1015 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0922 1088 Gene3D Phosphorylase Kinase; domain 1 724 817 - -
Cone2ag0922 1088 Pfam Leucine rich repeat 429 481 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 818 1038 - -
Cone2ag0922 1088 SUPERFAMILY Protein kinase-like (PK-like) 733 1019 IPR011009 -
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 570 658 IPR032675 -
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 486 569 IPR032675 -
Cone2ag0922 1088 ProSiteProfiles Protein kinase domain profile. 742 1026 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0922 1088 SUPERFAMILY L domain-like 306 647 - -
Cone2ag0922 1088 SMART serkin_6 742 1026 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 305 389 IPR032675 -
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 390 485 IPR032675 -
Cone2ag0922 1088 SMART LRR_sd22_2 267 299 - -
Cone2ag0922 1088 SMART LRR_sd22_2 444 467 - -
Cone2ag0922 1088 SMART LRR_sd22_2 146 172 - -
Cone2ag0922 1088 SMART LRR_sd22_2 122 143 - -
Cone2ag0922 1088 SMART LRR_sd22_2 348 380 - -
Cone2ag0922 1088 SMART LRR_sd22_2 468 487 - -
Cone2ag0922 1088 PRINTS Leucine-rich repeat signature 589 602 - -
Cone2ag0922 1088 PRINTS Leucine-rich repeat signature 125 138 - -
Cone2ag0922 1088 SMART LRR_typ_2 444 467 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 348 372 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 170 194 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 373 396 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 122 146 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 516 540 IPR003591 -
Cone2ag0922 1088 SMART LRR_typ_2 492 515 IPR003591 -
Cone2ag0922 1088 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
Cone2ag0922 1088 Gene3D Transferase(Phosphotransferase) domain 1 818 1044 - -
Cone2ag0922 1088 FunFam Predicted protein 186 286 - -
Cone2ag0922 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 377 660 - -
Cone2ag0922 1088 SUPERFAMILY L domain-like 31 305 - -
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Cone2ag0922 1088 PANTHER OS04G0122200 PROTEIN 395 1018 IPR051809 -
Cone2ag0922 1088 FunFam Uncharacterized protein 300 376 - -
Cone2ag0922 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 863 875 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0922 1088 FunFam Putative LRR receptor-like serine/threonine-protein kinase 727 817 - -
Cone2ag0922 1088 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 571 589 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 543 563 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 614 632 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 518 540 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Pfam Leucine Rich Repeat 327 348 IPR001611 GO:0005515(InterPro)
Cone2ag0922 1088 Gene3D Ribonuclease Inhibitor 189 304 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0922 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0922 Cone-Chr2:34990626 Cone4ag1513 Cone-Chr4:11756834 4.35E-95 dispersed
Cone16ag0085 Cone-Chr16:455027 Cone2ag0922 Cone-Chr2:34990626 1.21e-316 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82636 PF11559 ADIP 1.30E-41 No_clan Cone PK