Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0927 ATGTCGGAGTATGAAGCTTTGCAATATCGATCTGGACGTGATATCACAGTTGAAGGACATGATGTCCCTAAACTAATTTGTATCTTTCAAGAAGCATATTTTCCCGATTACTGCCTTGAGGTGATTAGTAAATTGGGTTTTGTTGAGCCAACACCAATTCAATATCAAGGATGGCCAATGGCTCTAAGGGGTAGAGATTTAATCGGCATTGCTGAGACGGGTTCGGTTAAAACATTGGCATATCTTCTGCCAGCTTTTAGTACATCACAAGGTGAAGGTCCTATTGAATTGGTGTTAGTGCCTACAACAGAGTTGGTTGGGCAAATTCAAGAAGCTGTTAAATTTGGGTCACATTCTAATGTCAGAAAAAGGACTTATGTTTTACTTATTGCAAGTGTTGAGACTGTTATTGCTACTCCTGGACGTCTAATAGATATGCTGGAAGCTCAACACACAAACTTGTGGAGAGTAACATACCTTGTTTTAGACAAGGCAGATCGGATGTTAGACATGGGATTTGAACCTCAAATAAGGAAACTTGTAAACCAAGTACGACCTGATAGACAGACATTGTTTTGGAGTGCTACATGGCCAAGGGAGGTAGAGACTCTAGCAAGGCAATTTTTATGGAATCCTTACAAGGTTGATCTGAAAGCAAACCAGTCTATCAACCAAGTTCTGGAAATCGTGACAGACATGGAGAAATATACTAGGTTGAGTAGACTGCTCAATCAAGTGACAGATGGGAACCGTATATTGATATTCATGGAAACAAAAAAGGATGCGATCAAGTTACAAGGCAATTGA 807 39.9 MSEYEALQYRSGRDITVEGHDVPKLICIFQEAYFPDYCLEVISKLGFVEPTPIQYQGWPMALRGRDLIGIAETGSVKTLAYLLPAFSTSQGEGPIELVLVPTTELVGQIQEAVKFGSHSNVRKRTYVLLIASVETVIATPGRLIDMLEAQHTNLWRVTYLVLDKADRMLDMGFEPQIRKLVNQVRPDRQTLFWSATWPREVETLARQFLWNPYKVDLKANQSINQVLEIVTDMEKYTRLSRLLNQVTDGNRILIFMETKKDAIKLQGN 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35049284 35050820 - Conep02aG0196100.1 Cone2ag0927 433394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0927 268 SMART ultradead3 46 226 IPR014001 -
Cone2ag0927 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 216 IPR027417 -
Cone2ag0927 268 Gene3D - 1 214 IPR027417 -
Cone2ag0927 268 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724(InterPro)
Cone2ag0927 268 Gene3D - 215 268 IPR027417 -
Cone2ag0927 268 Pfam DEAD/DEAH box helicase 51 203 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone2ag0927 268 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 265 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone2ag0927 268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 215 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0927 K12823 - - rcu:8280293 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0927 Cone-Chr2:35049284 Cone7ag1212 Cone-Chr7:9007644 1.57E-110 dispersed
Cone16ag0932 Cone-Chr16:9495141 Cone2ag0927 Cone-Chr2:35049284 3.11E-63 wgd
Cone16ag0078 Cone-Chr16:390051 Cone2ag0927 Cone-Chr2:35049284 6.59E-141 wgd
Cone2ag0116 Cone-Chr2:562501 Cone2ag0927 Cone-Chr2:35049284 5.21E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1