Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0931 ATGAAGCTTTACGTGTATGTTTTAGAAGCTAAAGACTTGCATGCGAAGTACTCCTACGTTAAGCTTAAAGTGGGTAAGCACAAATCCAAGACAAGGATTTTGAGGAATACACAGAACCCTGTTTGGAACGAGGAATTTGTTTTCAAGGTCTCTGATTTAGACAAAGAACTTGTTGTCTCTGTTTTGGAACAGAGAGATGACTCTGCTTCCATTTTCAACGGGTTGGGTTCTTCTGCTTTAACGGGTCATGTTCGGATCCCGTTATCGAGTGTTGTTGCTGAGGATAATCGAATCTTACCACCCACTTGGTTTCCTCTTGAACGGGTCAAGACTGAGAGGTTTATCGGAGAAGACTGCGGAAAAATTCTACTTATGATGTCTCTACATAATAAGGGCCATGGCACTTTCAAGAACTTCCTCCCATTTTCGTCTGATATGATTACAATGGACTCTAAAGAATCGGGCACCTTGTCTATGTCATCTCGTGATATACCTAAATCAAAACCATCAAAAAAGTTAATGAAGACTATACTCAACCGTTTCAACAAGCTATTGCATAAGAATGGGGAAAGCTCAAGAACGGGTAGTTCTTCGGAACTATGTAGCACAACATCCGATTACGAGGATTCTATCGAGGAAAATCCTTCTACTTCTAGTTTTGAAGAAGAACTTGAGAAAATGAAGTCAAAAGGGGATGATCAAGTCATGCCTAATAACCTTCCAGGAGGAATTCTTCTAGATCAATCTTATTTAGTTTCTCCACACGATCTTAATAACTTTCTCTTCTCACCCATGTCCCACTTCCGGAAATCTCTTGCTGAACTTCAAGGAACAACAAATGTACAAGAAGGGTTATGGACGTGGAAATGTGCTAATGATTCCGAGCCATGTCTATCTAGAGTAGTTTCTTACACAAGAGCCGCTACAAAGTTAGTTGGGTCAGTTAAAGCCGTAGAAGAACAGACCTATGTAAAAGTGTGTGGAACTGAATTCGCCATTTTTGTTAGTGTAAGTACTCCAGAGGTTCCCTATGGTACTAGTTTCAAGGTTGAGATTCTTTACAAGATTCTTCCCGGGCCTGAGGTATCTTCTTCGGGAGAAGATTCCTCTTCTCGTCTTATAGTATCTTATGGGATTAACTTTCTACATAGTACAATGATGAAAGGAATGATAGAAGGAGGAGTAAGGCAAGGCTTGAAGGAAAGTTTTGAACAGTTTAGTAACTTGATGGGACAGAATCTTCCGGTTTTGAATTCTGAGGACTTATCGGATCGGGATTCTGTCCTTGCAAGTTTAGAAGCTGAACATAAATCAGATTGGGAATTTGCTGCTTATTATTTTTGGAACTTCACTGTGATTTCGACGGTTTTTATGGCTCTTTATTTCTTAGTGCACATTCTATTGTGTGGACCAAGCATAGCCCAAGGATTGGAATTCATCGGACTTGATTTGCCGGATAGTTTTAGTGAACTAATCGCCAGTGGAATATTAGTACTTCAGTTGGAACATGTCTATAACATGGTCTCCTACTTTCTACAAGCTACATTGAAAAGAAGAGGTGATCATGGAGTTAAAGCGGAAGGTGATGGATGGATCCTAACTGTAGCTGTCATGGAAGGAGTCAACATATCATCTTTGGACCAGCTAGGTTTTCCGGACCCTTATGTGGTTTTGACATGCAATGGCAGAACAAGAACAAGTTCGGTTAAGCTTCAAACTCATAATCCTCAATGGAACGAGATTCTTGAACTTGGTGCTATGGAGGACCCACCGTCGGTTTTAGAAGTTGAAATTTTCGATTTTGATGGTCCATTTAACCAAGGTGCATTACTTGGCCATGTAGAGATAAATCTTTTGAAACACACATCAACTGAACTTGCAGACATGTGGGTCCCACTCGAGGGGAAGCTTGCTCAGGCTTCTCAGACGAAGTTACATCTGAGAATATTTATGGACAATAGTAACGGAGTCGAAACGATTAAAGAGTACTTGACCAAGATGGAAAAAGAAGTCGGAAAGAAGTTGAATTTGCAGTCACCACACAAGAATTCCGTGTTCCAAAAGCTGTTCGGCTTGCCACCCGAAGAGTTTCTTATAAGCGACTTCACTTGCTCCTTGAAAAGGAAAATTCCTTTGCAGGGAAGGCTGTTTCTATCAGCAAGGACCGTCGGGTTTTACAGTAACTTGTTTGGACATAAAACCAAGTTTTTCTTCCTTTGGGAAGATATCGAAGATGTTAAAATTCTTCCGCCTTCAATTTCGTCCATAGGCACTCCAACACTAATCATAGTTCTTCGAATAGGTCGAGGCCTAGATGCAAGTCACAGTGCAAAGTCTCGAGATGAAGAAGGCAGGTTAAAGTTTTATTTCCAATCGTTCGTGTCCTTTAATGAAGCCTCAAGGATGATAATGGCCTTGTGGAGGACTAGAACGATGAGTCCCGACCAGAGAGATCAAATTAGTGAAGAGCACGAGGATCAAGAAGAACGATTCGTAATGCTGGAGGATGCCGGATTCTTTCTAGATTTTGATGAGGCAAAGATGTCTGAAATCTATTCTGAAGAACTACCCATCAATATAAACTTGTTGATGGAAATGTTCAGGGGTGGAAAGATAGAACACAGAGTCATGGAAGAATCTGGTTGTCTTCATTACACGACAACTACATGGGAACCCGTAAAACCCGATCACGTGTTTGAACGGCATTTATCGTATAAATTCAATCGCTTTGTCTCAATTTTCGGAGGAGAAGTCACATGTACACAACAAAAGTTCCCTCTTGGAAACGATCAAGGATGGATCATTAATGAGACCATGACCTTGCATGACATTCCGTTTCATGACCATTTTCGTGTTCATTTTAGGTATGTGATTGAGAGATTGGGGGTCTCTTGCGACGCAAGCAAGTGCAAGTGTAGTGTTAAGTTTGGAATCAGTTGGTTGAAGAGCACCAAGTTTCAGGAGAGGATCAGTCATAACATTGCCGACAAGTTTGCTCATAGACTTAAACTGATATTCGAGCTGGTTTCGAGAGAGATTTTCCCGGAAAATAAGCAAGAAAATTCCATTTGA 3072 40.85 MKLYVYVLEAKDLHAKYSYVKLKVGKHKSKTRILRNTQNPVWNEEFVFKVSDLDKELVVSVLEQRDDSASIFNGLGSSALTGHVRIPLSSVVAEDNRILPPTWFPLERVKTERFIGEDCGKILLMMSLHNKGHGTFKNFLPFSSDMITMDSKESGTLSMSSRDIPKSKPSKKLMKTILNRFNKLLHKNGESSRTGSSSELCSTTSDYEDSIEENPSTSSFEEELEKMKSKGDDQVMPNNLPGGILLDQSYLVSPHDLNNFLFSPMSHFRKSLAELQGTTNVQEGLWTWKCANDSEPCLSRVVSYTRAATKLVGSVKAVEEQTYVKVCGTEFAIFVSVSTPEVPYGTSFKVEILYKILPGPEVSSSGEDSSSRLIVSYGINFLHSTMMKGMIEGGVRQGLKESFEQFSNLMGQNLPVLNSEDLSDRDSVLASLEAEHKSDWEFAAYYFWNFTVISTVFMALYFLVHILLCGPSIAQGLEFIGLDLPDSFSELIASGILVLQLEHVYNMVSYFLQATLKRRGDHGVKAEGDGWILTVAVMEGVNISSLDQLGFPDPYVVLTCNGRTRTSSVKLQTHNPQWNEILELGAMEDPPSVLEVEIFDFDGPFNQGALLGHVEINLLKHTSTELADMWVPLEGKLAQASQTKLHLRIFMDNSNGVETIKEYLTKMEKEVGKKLNLQSPHKNSVFQKLFGLPPEEFLISDFTCSLKRKIPLQGRLFLSARTVGFYSNLFGHKTKFFFLWEDIEDVKILPPSISSIGTPTLIIVLRIGRGLDASHSAKSRDEEGRLKFYFQSFVSFNEASRMIMALWRTRTMSPDQRDQISEEHEDQEERFVMLEDAGFFLDFDEAKMSEIYSEELPININLLMEMFRGGKIEHRVMEESGCLHYTTTTWEPVKPDHVFERHLSYKFNRFVSIFGGEVTCTQQKFPLGNDQGWIINETMTLHDIPFHDHFRVHFRYVIERLGVSCDASKCKCSVKFGISWLKSTKFQERISHNIADKFAHRLKLIFELVSREIFPENKQENSI 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35062258 35066861 + Conep02aG0196500.1 Cone2ag0931 433398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0931 1023 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 531 653 IPR035892 -
Cone2ag0931 1023 Gene3D C2 domain 1 131 IPR035892 -
Cone2ag0931 1023 ProSiteProfiles VASt domain profile. 847 1013 IPR031968 -
Cone2ag0931 1023 MobiDBLite consensus disorder prediction 188 236 - -
Cone2ag0931 1023 Pfam C2 domain 2 106 IPR000008 -
Cone2ag0931 1023 Pfam C2 domain 532 633 IPR000008 -
Cone2ag0931 1023 Gene3D C2 domain 516 652 IPR035892 -
Cone2ag0931 1023 ProSiteProfiles C2 domain profile. 518 631 IPR000008 -
Cone2ag0931 1023 MobiDBLite consensus disorder prediction 188 214 - -
Cone2ag0931 1023 Gene3D - 682 809 IPR011993 -
Cone2ag0931 1023 CDD C2 533 633 - -
Cone2ag0931 1023 SMART gram2001c 684 750 IPR004182 -
Cone2ag0931 1023 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 130 IPR035892 -
Cone2ag0931 1023 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Cone2ag0931 1023 Pfam VAD1 Analog of StAR-related lipid transfer domain 851 995 IPR031968 -
Cone2ag0931 1023 Pfam VAD1 Analog of StAR-related lipid transfer domain 245 398 IPR031968 -
Cone2ag0931 1023 ProSiteProfiles VASt domain profile. 241 418 IPR031968 -
Cone2ag0931 1023 Pfam GRAM domain 685 749 IPR004182 -
Cone2ag0931 1023 Coils Coil 817 837 - -
Cone2ag0931 1023 PANTHER BNAA05G37250D PROTEIN 1 1013 IPR044511 -
Cone2ag0931 1023 SMART C2_3c 2 100 IPR000008 -
Cone2ag0931 1023 SMART C2_3c 532 630 IPR000008 -
Cone2ag0931 1023 CDD C2 3 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0931 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0931 Cone-Chr2:35062258 Cone9ag1164 Cone-Chr9:8284980 6.30e-320 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30