Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0933 ATGCCACAGGATTTGTCGTCGGAGCAGGAATCGGACGATCCTGATTACGAGTTTGCTGAGGTTGATCCTACTGGTCGATATGGACGGTACAAGGAGATTCTGGGAAAAGGTGCTTTCAAAAAAGTATATAGGGCTTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAACCAGGTTAAGGTGGCGGATTTATTGCAGAATTCCGAAGATCTGGAACGTCTATATTCCGAAGTTCATTTGCTCAAGACTTTGAAGCACAAGAACATTATTAAGTTTTATAATTCTTGGGTCGACACTAGAAACGAAAACATAAACATCATCACAGAGATATTTACTTCTGGAACATTGCGCCAATATAGGAAGAAACATAAGCATGTTGATTTGAGGGCATTGAAGAAATGGTCTAGACAGATTTTGGAGGGCCTTTTCTATCTCCACAGCCATGATCCACCTGTGATTCATCGAGATTTAAAGTGCGACAACATATTTGTCAATGGAAACCAAGGGGAGGTGAAGATTGGAGATTTAGGACTAGCTGCCATTCTTCAGCAAGCCCGCTTAGCTCACAGTGTAATAGGTACCCCGGAATTTATGGCTCCAGAGCTGTATGAAGAGGAATACAATGAGCTTGTAGACATTTATGCATTTGGCATGTGCTTAATAGAGTTGGTGACCTTCGAATATCCCTACGTCGAATGTGCGAATGCTGCTCAAATATACAAGAAAGTGACATCGGGGATAAAGCCAGCTTCACTAGCAAAAGTTACTGATCCTGACGTTAGAGCGTTTATCGAAAAATGCATTGCCAATGTCTCTGATCGTTTACCAGCCAGTGATCTCTTACGGGACCCATTTCTCCAATCTGACGATGATCCTGACAGTGTACATCGTCGTCCTTTACAACCGAAAATCCATCAAACAGAACAATGTAGTGATAAACAGATTGGTGCCAGTGCTCTGGATACTTCTGCTGAGGCTAGTAGAGATGTTACAGTACAAGGACAGAGGAAAGATGATAACACTATATTTCTCAAATTAAAGATACCAGACCCCTCAGGTGATTTCCACAATATCCACTTCCCATTTGATATCGAGGCAGACACCGCAATTTCCGTGGCCAGTGAAATGGTCCAGGAGCTTTCCCTAACATACGAAGACGTCTCAACCCTAGCCGAAATGATCGACTCTGAAATCCGGGCCCACAACCCCGACTGGACCCCACGAGAACATTTCAGTGATAGTTCCGAAGGAGAAGTTGCAATTTCTGATAGCCCTGCTGTCATGGGAACCAATGATGAGGATGATGATAATGATGGTTATGAGGCCTCTCTCTTGTCTATTGAATTGAACCAGTTAACTCAAATGGGTAAGCTCGCATTAGAAAGGACCTTTTCTGGTCGTAAATATTGGTCCGAGTCTCCCAAGGGAGGTGGTAGAAACTCTCCGGCTAAGTGGTTGCCTCCTTCTAACTTGTCTCCTAAACACGATACAATCAAAGAAACTCCTTCCACTTCAGAATTTGGATCTAGTGATTGTGTATTGGAGCAGGTTGAATCAGAAGCTGTCAATTCAATTGCTGAGAAACTTGAAAATTTGATGATGCAGCAAAAAGAGGAGATGGATGAATTAGTGAGGAAGCATAAAGTAGCCGTATCAGAACTTCTGCGAGATGTCCACCCGGAAAAATATTGGGAAGTTTTGAGAATATGTAAGGTGAAGATTCCTGAATAA 1731 42.63 MPQDLSSEQESDDPDYEFAEVDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVADLLQNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTRNENINIITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLFYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARLAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLIELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVTDPDVRAFIEKCIANVSDRLPASDLLRDPFLQSDDDPDSVHRRPLQPKIHQTEQCSDKQIGASALDTSAEASRDVTVQGQRKDDNTIFLKLKIPDPSGDFHNIHFPFDIEADTAISVASEMVQELSLTYEDVSTLAEMIDSEIRAHNPDWTPREHFSDSSEGEVAISDSPAVMGTNDEDDDNDGYEASLLSIELNQLTQMGKLALERTFSGRKYWSESPKGGGRNSPAKWLPPSNLSPKHDTIKETPSTSEFGSSDCVLEQVESEAVNSIAEKLENLMMQQKEEMDELVRKHKVAVSELLRDVHPEKYWEVLRICKVKIPE 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35077677 35081306 - Conep02aG0196700.1 Cone2ag0933 433400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0933 576 CDD STKc_WNK 26 286 - -
Cone2ag0933 576 Coils Coil 519 553 - -
Cone2ag0933 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0933 576 Gene3D - 340 431 - -
Cone2ag0933 576 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0933 576 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 510 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone2ag0933 576 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Cone2ag0933 576 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Cone2ag0933 576 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0933 576 MobiDBLite consensus disorder prediction 284 303 - -
Cone2ag0933 576 SUPERFAMILY Protein kinase-like (PK-like) 30 315 IPR011009 -
Cone2ag0933 576 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Cone2ag0933 576 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0933 576 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 352 398 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cone2ag0933 576 MobiDBLite consensus disorder prediction 282 308 - -
Cone2ag0933 576 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cone2ag0933 576 MobiDBLite consensus disorder prediction 494 509 - -
Cone2ag0933 576 MobiDBLite consensus disorder prediction 470 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0933 Cone-Chr2:35077677 Cone5ag0535 Cone-Chr5:2272794 2.91E-170 dispersed
Cone16ag0070 Cone-Chr16:356792 Cone2ag0933 Cone-Chr2:35077677 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82637 PF13041 PPR_2 4.20E-16 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0933 K08867 - csv:101206177 730.324