Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0934 ATGGATGATCCAGGCGCCGTAACAAAGCCGGGCCAGAGCGTCTTCATGTCGCTTTACCGGACAAAAGTAGCCGATCAATGCCGGTTAATCACGATCACTTGGTGCAAAAACTTACTACTCCATGGTCTCTCTATCTCAATAGAAGGTCCTAATGGAGATAGTCAATATACCTGCAAGGTTGAGTTGAAGCCATGGTATTTTTGGAGGAAACAAGGCTCGAAAAGAATTACGGTCGACAGTGATAAAACGATTGATATCTATTGGGATCTTAAATCGGCAAAGTTTAATGGAGACACGGAGCCTAGTTCGGATTATTATGTTGCTATTGTTTGTGATCAAGAAGTTGTTCTACTTCTTGGTGATCTAAAGAAAGATGCGTATAGGAAAACCGGATGTAGACCGGCTTTGATCGATCCCATTTTGGTTTGTAAAAAGGAACATATTTTTGGGAAGAAGAAGTTTTCGACAAGATCTAAGTTTCATGATAAAGGTAGATTCCATGAAATCTCAATTGAGTGCAAGAATGGTGCTATGATCAATGGCAGCTCTTCTTCTTCTTCTTCTTCTTCTTTATCGAATGGGATTGAGCCAGAACTGGAGATTAAGATCGATGAGCACTTGGTGATTCATGTGAAGCATCTTCGATGGAAGTTTAGAGGTAATGAGTCAATTTATGTCAATAAAGTAAGAGTAGAAGTGTTTTGGGATGTTCATGATTGGCTTTTTAGTCCTGGTTTAAGGCACGCATTGTTTATCTTCAAGCCCATTTCGTCGCCCATTTCGATCACGTCACCACTGACATCACCGACCCCGTCTTCGTCTTCTCCGTTATCATCCTCGACTTTGACGCCTATGTTGTCTTTAACGAAGAGTTCCGGGTCTTTAGAAGGGTTTAATTCAAGTGGGTCGTCTGAGTTTTGCTTGTTTCTATGCGCTTGGAAAGTTGAATGA 951 41.32 MDDPGAVTKPGQSVFMSLYRTKVADQCRLITITWCKNLLLHGLSISIEGPNGDSQYTCKVELKPWYFWRKQGSKRITVDSDKTIDIYWDLKSAKFNGDTEPSSDYYVAIVCDQEVVLLLGDLKKDAYRKTGCRPALIDPILVCKKEHIFGKKKFSTRSKFHDKGRFHEISIECKNGAMINGSSSSSSSSSLSNGIEPELEIKIDEHLVIHVKHLRWKFRGNESIYVNKVRVEVFWDVHDWLFSPGLRHALFIFKPISSPISITSPLTSPTPSSSSPLSSSTLTPMLSLTKSSGSLEGFNSSGSSEFCLFLCAWKVE 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35084343 35085293 + Conep02aG0196800.1 Cone2ag0934 433401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0934 316 PANTHER EXPRESSED PROTEIN 6 314 IPR008586 -
Cone2ag0934 316 Pfam Plant protein of unknown function (DUF868) 11 314 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0680 Cone-Chr12:6229855 Cone2ag0934 Cone-Chr2:35084343 3.65E-111 dispersed
Cone2ag0934 Cone-Chr2:35084343 Cone8ag0695 Cone-Chr8:7027350 3.65E-109 dispersed
Cone6ag0427 Cone-Chr6:2075880 Cone2ag0934 Cone-Chr2:35084343 1.88E-85 transposed
Cone12ag1300 Cone-Chr12:9878236 Cone2ag0934 Cone-Chr2:35084343 1.80E-78 transposed
Cone16ag0069 Cone-Chr16:345616 Cone2ag0934 Cone-Chr2:35084343 1.56E-206 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g837 Blo04g00715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0934 Cone16ag0069 . . . . . . . . Bda11g01647 Bda14g00793 . Bpe15g00656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68