Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0938 ATGGAGTTCTCTGCCACCATGTCAATGAACGCTCACGCTCCCGTTTCTTCTCCTTCTTCCTTCTCGTCTTCGTTTTTCGCTCTCTCTCCGAGTCCAAACCCTAAATCCGTTCCTTTCAAGCTTTTGTCCAACAATCCTCAGATACCTTTCATCAAATCGCTCAAGTGCATTCTGTCGGATTCGAATCCGAGAAATCAACGTACATCTCCATTTTCATACTCCGCCGTTGCTTTCTCTCCCTCACAAACCGCCGATCAGCTCGTTCAGTTCAAGCTACAGCGTTTAATCGCGGAGTTCGAATCGCTATCTGAGCCGGTGGATAGAGTGAAGCGGTTGTTACACTATGCGAGTCTTCTTCTTTCGTTTGATGACTCGGAACGAGTTGACTCGAACCGAATTATGGGATGTACGGCTCAGGTGTGGCTGGAGTCGAGGATTGATTTCGAAGGGAAGATGAGGTTTAGAGCTGATAGCGATTCGGAGATTTCCAAGGGATTTTGTTCGTGTCTGGTTGTGGTTCTTGATGGTGCGACGCCTGAGGAGGTTTTGAGTGTGAAGACTGAAGATTTAGCGGCGCTTAATGTGGGAATTCCCGGCGGAGAGAGGTCTAGGGTTAATACTTGGCATAATGTTTTGATTGGTATGCAGAAAAGAGCCAGGGGATTGGTTGCTGAAAGGGAAGGGAAAGCTCCTTTTGAGCCTTTTCCATCACTGGTTGTCACCTCTGATGGGATTCAGGCTAATGGAAGTTACGCTGAAACTCAGGCAAAATATCTGTTCCCTGATGAAACGAAGGTTAAAGAACTTGTCAACATGCTAAAAGAGAAGAAAATTGGTGTTGTTGCACATTTTTATATGGATCCTGAAGTTCAAGGCATCTTAACTGCTGCGAAAAAGGAGTGGCCTCACATTTATATATCTGATTCGTTAGTAATGGCTGACATGGCTGTTAAGATGGCAAAAGCCGGATGCAAATTCATTACAGTATTGGGTGTAGATTTTATGTCAGAAAATGTTCGTGCAATTCTTGATCAAGCTGGTTTCGGGGAGGTTGTTGTGTACCGGATGTCAGATGAACGCATTAGTTGTTCTTTAGCAGATGCCGCAGCTACCCCTTCTTATATGAACTATCTTGAAGCAGGCTCTAGAATGCCCCCATCATTGCACGTTATTTACATAAATACCGCTCTGGAGACCAAAGCATATGCCCATGAACTCGTGCCAACAATTACCTGTACTTCTTCAAATGTCGTACAGACTATTTTGCAGGCTTTTGCTCAAGTTCCAGGTTTGAATATATGGTATGGCCCTGATGCATATATGGGTGCGAATATTGTGGAGCTCTTACAACAGATGACAAAGATGACTGATGAAGAAGTTGCTAAGATTCATCCGCAACATAATAGGGACTCAATCAGATCATTGCTCCCTCGTCTACATTATTATCAGGAAGGGACATGCATTGTACATCACCTTTTTGGCCATGAAGTTGTAGAAAAGATAAACAAGATGTACTGTGATTCATTCCTCACTGCCCATTTCGAGGTCCCAGGTGAAATGTTTTCTCTAGCAATGGAAGCTAAGAGAAGAGGAATGGGGGTCGTAGGGTCCACCCAAAACATATTAGATTTCATAAAGCAGAGGGTACAAGAATCTCTGGACAGAAACCTCAATGACCATCTCCAATTCGTATTAGGAACGGAATCCGGAATGGTCACCTCAATCGTTGCATCCGTCCGTGATTTGTTGGGTCCCACAAATTCCTCCGAAAATTCAAAAAAAATCAGTGTGGAGATAGTCTTCCCTGTTTCTTCAGATTCTATGTCAAAACCATCATCGAATTCCACTTCAAGTCTAAACTCAGTTAAAGTTGGTGACATCATTTTACCTGTTGTTCCTGGAGTTGCTAGTGGAGAGGGTTGTTCCATTCATGGAGGGTGTGCTTCCTGTCCCTACATGAAGATGAATTCTTTAAGCTCCCTTCTAGAAGTTTGCCGCCATCTACCCGACAAGAAAAATGCCATATCAGCTTACGAAGCCAAGCGATTCAAATTACAAACCTTAACAGGAAAATCGGTTGCAGATGTCGGATGTGAACCAATCTTGCATATGAGAGATTTCCAGGCTACGAAACAGCTGCCGGAGAAACTAGTTGGTCAAATTAATCAACTCCGCTCACAATGA 2184 43.82 MEFSATMSMNAHAPVSSPSSFSSSFFALSPSPNPKSVPFKLLSNNPQIPFIKSLKCILSDSNPRNQRTSPFSYSAVAFSPSQTADQLVQFKLQRLIAEFESLSEPVDRVKRLLHYASLLLSFDDSERVDSNRIMGCTAQVWLESRIDFEGKMRFRADSDSEISKGFCSCLVVVLDGATPEEVLSVKTEDLAALNVGIPGGERSRVNTWHNVLIGMQKRARGLVAEREGKAPFEPFPSLVVTSDGIQANGSYAETQAKYLFPDETKVKELVNMLKEKKIGVVAHFYMDPEVQGILTAAKKEWPHIYISDSLVMADMAVKMAKAGCKFITVLGVDFMSENVRAILDQAGFGEVVVYRMSDERISCSLADAAATPSYMNYLEAGSRMPPSLHVIYINTALETKAYAHELVPTITCTSSNVVQTILQAFAQVPGLNIWYGPDAYMGANIVELLQQMTKMTDEEVAKIHPQHNRDSIRSLLPRLHYYQEGTCIVHHLFGHEVVEKINKMYCDSFLTAHFEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKQRVQESLDRNLNDHLQFVLGTESGMVTSIVASVRDLLGPTNSSENSKKISVEIVFPVSSDSMSKPSSNSTSSLNSVKVGDIILPVVPGVASGEGCSIHGGCASCPYMKMNSLSSLLEVCRHLPDKKNAISAYEAKRFKLQTLTGKSVADVGCEPILHMRDFQATKQLPEKLVGQINQLRSQ 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35096959 35100532 - Conep02aG0197200.1 Cone2ag0938 433405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0938 727 SUPERFAMILY NadA-like 266 670 IPR036094 GO:0008987(InterPro)|GO:0009435(InterPro)|GO:0051539(InterPro)
Cone2ag0938 727 FunFam Quinolinate synthase, chloroplastic 86 225 - -
Cone2ag0938 727 Gene3D - 261 368 IPR036094 GO:0008987(InterPro)|GO:0009435(InterPro)|GO:0051539(InterPro)
Cone2ag0938 727 Pfam Quinolinate synthetase A protein 269 577 IPR003473 GO:0008987(InterPro)|GO:0009435(InterPro)|GO:0051539(InterPro)
Cone2ag0938 727 Gene3D - 487 582 IPR036094 GO:0008987(InterPro)|GO:0009435(InterPro)|GO:0051539(InterPro)
Cone2ag0938 727 PANTHER QUINOLINATE SYNTHETASE A 226 721 IPR003473 GO:0008987(InterPro)|GO:0008987(PANTHER)|GO:0009435(InterPro)|GO:0009507(PANTHER)|GO:0034628(PANTHER)|GO:0051539(InterPro)|GO:0051539(PANTHER)
Cone2ag0938 727 SUPERFAMILY SufE/NifU 90 226 - -
Cone2ag0938 727 FunFam Quinolinate synthase, chloroplastic 487 583 - -
Cone2ag0938 727 Pfam Fe-S metabolism associated domain 97 217 IPR003808 -
Cone2ag0938 727 Gene3D - 369 459 IPR036094 GO:0008987(InterPro)|GO:0009435(InterPro)|GO:0051539(InterPro)
Cone2ag0938 727 FunFam Quinolinate synthase chloroplastic 370 459 - -
Cone2ag0938 727 Gene3D - 78 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0938 K03517 - - csv:101208114 1063.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0938 Cone-Chr2:35096959 Cone8ag0698 Cone-Chr8:7052721 3.93E-53 dispersed
Cone13ag1085 Cone-Chr13:8817718 Cone2ag0938 Cone-Chr2:35096959 4.43E-62 wgd
Cone16ag0065 Cone-Chr16:334344 Cone2ag0938 Cone-Chr2:35096959 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g849 Blo04g00713 . . . . . . . Cmo13g00792 Cmo18g00160 . . . . . Cpe20g00342 . . . . . . . . . . . . . . . Cone2ag0938 Cone16ag0065 . . Lsi02g00425 Csa01g00893 Chy12g01231 Cme12g01654 . . . . . Bpe15g00658 . . Sed08g2480 . . Cma13g00762 Cma18g00198 Car13g00614 Car18g00192 Cpe09g00995 . Bhi08g01671 Tan05g1952 Cmetu03g2261 Lac10g0501 Hepe07g2191 . . Cla03g00293 . Cec03g0306 Cco03g0319 . Cmu03g0922 Cre03g0613 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007550 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36