Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0942 ATGATGATGATTTCGCAAGACGAGATTGATAGGGATGCGATAAATCACGCTCTCAAGGCGCTTCGGAAACGGCACTTAGTCGAAGAAGGTGCTCATTGCCCAGCTATTACTGCTCTTTCTAGACCTATCGTCTCCCAGGGTTCGGAATGGAAGGAGAAAGCAGAGAGTCTGGAATTGGAACTTCAACAATGTTACAAAGCTCAATCCCAATTATCGCAGCAACTTGTGGTGGATGTTGCTGAGTCCAGAGCTTCTAAAGTTTTAATTCAGGAGAAAGAAGCTTTAATTGAGAAGCTCCAAAAGGAGTTGACTGAAACAAGGGAAGAATGCGCCCAATTAAAGGCTGATTTAGAAGAGAAAATTGAAGGGCTCGAGTTGCTAGTGTCTGAGAATCATGAGTTGAAGGGACAACTAGAAGCAATGGCAGTTAAGGTGAGAAATGCAGAGGCTGAAAATAAGATGTTAGTTGATCGTTGGATGCTGCAAAAGATGCAGGATGCAGAACGTCTCAATGAGGCAAATGCACTCTACGAAGACATGATCGAACGACTCCGAGCCAGTGGCTTAGAAAAGCTCGCTCAGCAACAAGTAGATGGTGTGGTCCGTCAAAGTGAAGAAGGCGCTGAATATTTTGTGGAGTCAACCATTCCTTCCACTCGCAAACATAGAATCACTGCCCATGAAGGTGGTTGTGCTTCCATACTGTTCCAATACAACTCAGCCAAATTAGTCACTGGAGGACAAGACCGGACCATCAAACTATGGGACACAAACACAGGATCCTTAACTTCCACTCTTCATGGGTCCTTAGGTTCAGTTCTTGATCTTACAATCACCCACGATAATCGTTCCATTATTGCAGCAAGCAGTTCAAACAACTTGTATGTCTGGGACATAGGGTCAGGTAGGGTCCGACATACTCTAACGGGCCATACAGATAAAGTATGTGCCGTAGATGTAAGTAAAGTCTCAAGCCGACATGTGGTTAGTGCTGCTTATGACCGTACGATTAAAGTATGA 1020 44.51 MMMISQDEIDRDAINHALKALRKRHLVEEGAHCPAITALSRPIVSQGSEWKEKAESLELELQQCYKAQSQLSQQLVVDVAESRASKVLIQEKEALIEKLQKELTETREECAQLKADLEEKIEGLELLVSENHELKGQLEAMAVKVRNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLRASGLEKLAQQQVDGVVRQSEEGAEYFVESTIPSTRKHRITAHEGGCASILFQYNSAKLVTGGQDRTIKLWDTNTGSLTSTLHGSLGSVLDLTITHDNRSIIAASSSNNLYVWDIGSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKV 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35114856 35117124 + Conep02aG0197600.1 Cone2ag0942 433409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0942 339 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 339 IPR045160 GO:0000045(PANTHER)|GO:0000045(InterPro)|GO:0000421(PANTHER)
Cone2ag0942 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 339 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 Coils Coil 167 187 - -
Cone2ag0942 339 Pfam WD domain, G-beta repeat 303 339 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 Pfam WD domain, G-beta repeat 261 298 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 Pfam WD domain, G-beta repeat 221 256 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 Coils Coil 82 127 - -
Cone2ag0942 339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 261 - -
Cone2ag0942 339 Gene3D - 174 339 IPR015943 GO:0005515(InterPro)
Cone2ag0942 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 Pfam Autophagy protein 16 (ATG16) 48 171 IPR013923 -
Cone2ag0942 339 SMART WD40_4 217 256 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 SMART WD40_4 301 339 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 SMART WD40_4 259 298 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 CDD Atg16_CCD 89 174 - -
Cone2ag0942 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515(InterPro)
Cone2ag0942 339 ProSitePatterns Trp-Asp (WD) repeats signature. 243 257 IPR019775 -
Cone2ag0942 339 Coils Coil 131 158 - -
Cone2ag0942 339 SUPERFAMILY WD40 repeat-like 217 339 IPR036322 GO:0005515(InterPro)
Cone2ag0942 339 Gene3D - 89 160 - -
Cone2ag0942 339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0942 K17890 - - cit:102610991 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0059 Cone-Chr16:311376 Cone2ag0942 Cone-Chr2:35114856 1.73E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32