Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0944 ATGACAACACCTTCACTACTATCTTCTTCTCTCACTACTCTCTCCTTCCTGATCATACCTCTCTTAATCCCCACCCTTGTCTCCTCCTTCCGGCCGGTTAAGCATCATCATCATCATCACGACCCGGAACTTGTCGTTGAAGACGTGCATAGGAGCATTAATGCATCGAGGAGGAATCTAGCTTATTTGTCGTGTGGGACCGGGAATCCGATCGACGATTGTTGGCGGTGCGATCCAAATTGGGAGAAGAACAGGCAGAGGCTAGCCGATTGTGCTATCGGGTTCGGAAAGAATGCCATTGGCGGAAGGGATGGTAAGATCTATGTGGTAACTGATTCAGGTGATGATGATCCCGTGAACCCGACACCGGGAACTTTACGGCACGCGGTCATTCAGGATGAGCCGCTATGGATCATATTTAAACGTGACATGGTGATCAAATTGAAAGAAGAATTGATCATGAACTCGTTCAAAACGATCGACGGCAGAGGAGCTAGCGTGCATATAGCAGGCGGGCCGTGCATAACCATCCAATACGTGACGAACATTATCATACACGGATTACACATACACGATTGTAAGCAGGGAGGGAACACTTACGTGAGGGATTCTCCGCAGCATTACGGGTGGAGGACGATATCCGACGGCGACGGTGTCTCGATCTTCGGTGGGAGCCACGTGTGGGTCGACCATTGCTCATTGTCAAATTGTAAAGACGGGCTGATTGATGCTATTCATGGGTCCTCTATGATCACAATCTCAAACAATTACATGACACAGCATGATAAGGTCATGTTGTTGGGTCATAGTGACTCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTTAATCATTTTGGAGAAGGCCTGGTGCAAAGGATGCCAAGATGTAGGCATGGATATTTTCATGTGGTGAATAATGACTATACTCATTGGGAAATGTATGCAATTGGGGGCAGTGCTGCACCTACTATCAATAGCCAAGGCAACAGATTTCTTGCCCCAGATGCCAGATTCAAAAAAGAGGTGACTAAACATGAGGATGCACCAGAGAGTGAATGGAAGCATTGGAATTGGAGGTCAGAGGGGGACCTGTTACTAAACGGTGCGTATTTTACACCTTCAGGAGCTGGAGCTTCTTCAAGCTATGCCAGAGCTTCAAGCTTAGGAGCAAAGTCAGCTTCTCTTGTGGGGTCCATAACGACTAGTGCAGGTGCACTTGGTTGCAGAAAGGGCTCCCGCTGCTGA 1254 47.85 MTTPSLLSSSLTTLSFLIIPLLIPTLVSSFRPVKHHHHHHDPELVVEDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVNPTPGTLRHAVIQDEPLWIIFKRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPQHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSSMITISNNYMTQHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDARFKKEVTKHEDAPESEWKHWNWRSEGDLLLNGAYFTPSGAGASSSYARASSLGAKSASLVGSITTSAGALGCRKGSRC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35120894 35122787 - Conep02aG0197800.1 Cone2ag0944 433411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0944 417 Pfam Pectate lyase 151 334 IPR002022 -
Cone2ag0944 417 SUPERFAMILY Pectin lyase-like 52 411 IPR011050 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Cone2ag0944 417 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Cone2ag0944 417 SMART amb_all 143 340 IPR002022 -
Cone2ag0944 417 FunFam Pectate lyase 68 410 - -
Cone2ag0944 417 Gene3D - 68 410 IPR012334 -
Cone2ag0944 417 PANTHER PECTATE LYASE 18-RELATED 23 414 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0688 Cone-Chr12:6283813 Cone2ag0944 Cone-Chr2:35120894 8.17E-240 dispersed
Cone15ag0231 Cone-Chr15:1079114 Cone2ag0944 Cone-Chr2:35120894 8.10E-229 dispersed
Cone2ag0181 Cone-Chr2:945453 Cone2ag0944 Cone-Chr2:35120894 1.08E-146 dispersed
Cone2ag0944 Cone-Chr2:35120894 Cone8ag0710 Cone-Chr8:7123264 1.75E-232 dispersed
Cone14ag0572 Cone-Chr14:2824773 Cone2ag0944 Cone-Chr2:35120894 2.85E-217 transposed
Cone13ag0192 Cone-Chr13:1209138 Cone2ag0944 Cone-Chr2:35120894 3.63E-250 wgd
Cone16ag0056 Cone-Chr16:296641 Cone2ag0944 Cone-Chr2:35120894 5.36E-289 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0944 K01728 - rcu:8285451 717.613