Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0949 ATGGCTGCTTCGTCTCTAGCATCTGAGCCAACTCAAGAGGTTTTTTCATGGCTGAGAACCCTACCCTTAGCACCAGAGTACCATCCGACTCTAGCCGAGTTCCAAGATCCAATTTCGTACATCTTCAAGATCGAGAAGGAGGCTTCCAAGTACGGAATCTGCAAAATCGTTCCTCCTGTTCAACCTTCTTCGAAGAAAACCGCAATTTCGAATCTAAACAAGTCGCTCTTAGCTCGTTCCTCCTCTGCGGACCCGAATAACCCCAAATCCCCGCCCACATTCACCACCCGGCAGCAGCAGATCGGGTTCTGCCCCAGAAAACCCCGGCCCATTCAGAAACCCGTATGGCAGAGCGGTGAGTACTACACTTTCCAGGAGTTCGAGGTTAAGGCTAAAAGCTTCGAGAAAAACTACTTAAAGAAATCTGCCAGGAAAGGTAGTGGAGGAGGGGGAGGGCTTTCTCCTCTAGAAATTGAAACCCTATATTGGAAAGCTACGGTTGATAAGCCCTTTAGAGTAGAGTACGCAAATGACATGCCGGGATCGGCTTTTATTCCGATTTCTAGCTCGAAGAAGAAGATGAGTAAGACTGGTAGTAGAGAAACAGGGGAGGGTGTGAGTTTGGGAGAGACTGATTGGAATATGAGAGGGGTGGCGAGGGCAAAAGGGTCATTGTTGAAGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCAATGGTGTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTTGAGGACCATGACTTGCATAGCTTGAATTATCTTCATATGGGGGCTGGTAAGACTTGGTATGGCGTGCCTAGAGATGCTGCTGTGGCCTTTGAGGAGGTGATTCGAGTTCATGGATATGGAGGAGAGATCAATCCACTTGTTACTTTTGCGGTACTTGGTGAAAAGACAACGGTTATGTCGCCTGAAGTATTTATCAATGCCGGGATTCCCTGTTGCAGGTTAGTTCAAAATGCGGGTGAATTTGTCGTCACTTTCCCCAGAGCATATCATACTGGGTTCAGTCACGGTTTCAACTGTGGAGAGGCAACTAATATTGCAACCCCAGAATGGTTGAGATTTGCTAAGGAGGCTGCAATTCGTAGAGCTTCAATCAATTATCCCCCTATGGTGTCTCATTTTCAGTTACTTTACGACCTTGCCCTTGCATTGTGCTCAAGGAAACCTGAGGGCATGGGCTCTGAACCAAGGAGCTCAAGGCTAAAAGATAAGAAAAAAAGTGAAGGCGAGACAGTGATAAAAGAGTTGTTTGTACAGAACATGGAAACGAATAATGAATTGCTTCATACTCTCGGAAAAGGATCTTCAGTTGTGCTTCTCCCTTGGAATTCAGCAGATATCTCTGTCTGTTCAAAATTACGAGTCGGGTCCCACTTAAGAGGAAACCCGCCCAGTTTCCCTCCCCTTGGTTTATGCTCTTCTAAGGAATCGATCAAGTCCTCAATCCTAGACCAAGGGAAAGATTTCTATCCGCTAAAAGGAACATTTTCTTCTTCTTCGGTTCATTCGGTAAATGGAAATGATTACTCTTCTTCTTCAAAAGCTAAGACTTTACATGCTGAAGGGTTGTCAGATCAGAGACTGTTTTCATGCGTTACTTGTGGGATTTTAAACTTTGATTGTTTAGCAGTCATTCAACCGAAAGAAGAAGCTGCTCGGAATCTTATGTCAGCTGATTGTAGCTACTTTAACGATTGGGTTGGCGGTTCTATGTTACCACATAATGGAGGGGTGGAGAGGAGTGTCCGTGATGATGTGAATGACATTCCTGTTCATACCTTGGATGAGAAAATTCTGAGAAAAGGTGAGGGCGTTATAGCAATTTCGAACAATGATGCTCTTGGTCTGTTAGCTTCAACCTATGGAAATTCATCCGACTCTGAAGAAGAAGATCAAGCCGGAGATAATACTGCTAATTTGGTAAATGGAAGTAGATCGGAAAGTAAAAACTGGTACGAGAATTCCGGTTTGCCTTCTACTTGCAATCAGAGTCTTTCATGTTCAAAGGTCAATGGTGCTGATGAAAAGTTTAATTGTTCGGGACAGCTTGAACCAACTGATGACAATGGGGATTCAAATGTAATTTCATGTTCAAATGCGGGTAAAAATGGTACACAACAAGATGATAAGTCGGCCATTGTACCAATGGAGAAGAACAAACATGTATCCTTTTTCTCAAGATCAGATGATGACTCTTCTCGATTGCATGTTTTTTGCCTTGAACATGCCGTTGAAGTGGAGCAACAGCTTCAGCCAATAGGAGGAGTGCACATAATGCTACTCTGTCATCCAGATTATCCGAAGATAGAGTCAGAAGCGAAAATGGTGGCAGAAGATTTAGGCATTGATCGAATCTGGAACGATGTAACATTCCGGAAAGCAACCAAAGAAGATGAGAAGACGATTCAATTAGCTCTTGACAATGAAGAAGCTATTAATGGAAATGGAGATTGGGCAGTAAAATTGGGCATCAATCTTTTTTACAGTGCGAATCTGAGCCACTCTCCTCTTTACATTAAGCAGATGCCTTACAATTCCGTTTTATACAATGCATTTGGCCGCTCTTCTCCTTCTTTCTCGTCAAGAAAAACCGAGGTCTATGAAAGGCGGACCGGTAAGCAGAAAAGGGTTGTTGCTGGAAAATGGTGCGGAAAAGTCTGGATGTCGAATCAAGTTCATCCGTTCCTAGCCAAGAAGGATAGAGAGGGGGAATACGAGGAAGAAAACGATAAAAATGATGATGAGAATGATAAAAGTTTCTTTGCTTGGTCAATGCCGAATGAGAAATCGGGGAGAAAGTCAGAGACAAGTACAGCAACAACTAGAAAGGCTCCGAGGAAGAGAAAGTTGACATCTAGTAACTTGACAAACAAGAAAGCCAAACGGGTAGAACCCGAGACTGTGATTTTTTCAGAGGATTTGATGGAAGAAGATGATCACCGTCCTCATTCTTGGCGGAAACAGAGGACTATTAAAAAACCAAAATTTGTTGAAAAAGAGGAGGCATTTTCCGAAGATATAGAAGGAGGAGAAGAAGGTAATTTATGTGGCCAGCATAGAAGGAATTCAATGAGCAAGCATGTTACATATTTCGAGACCAATGATGATGTGGTGATTTCAGAAAATTCCCTTGGCGAGAATGAAGATGCAGTTTCTGATCAGTCACATGGATATAATGACGATCATTATCGGCAATATAGGAGGATTCCTAGAACCAAGCAAGCTAAATGGACAGAGAGAGAAAAGGAGGCGGTTTCTGATGATTCTCTAGGCGATGAGGAGGAGTCTCATCTGAAAAGCAAGCAAACTAAATGGAATAATAACGAAGATGTGGATTTTTCTGATGAAGATTCTATGGAATACGATTCGCATGAGCAGGTTCATAGAGGCACGCGAGGTAAATGGATTCAGGGGGATGATGACATGGCTTCTGATGATTTGCTCCGGGATAGGAGGATTCCGGAAAGAAAATGGATAGAAAGAGGAGATGATTTTGATGATGATGATGATGATGTGGCTTCTAATTATTCACTTGGGGACGATCCTCATCAGCAAGGTAGGAGATTTCCAAGAAAAAAGCAAAGAGATGGTGGTGCTATACTTTCTGACGAATCTATGCACAATACCAATTCTTCTCAGCATTATAAGAGGGTTCGAAGAAGCAAGCAAATGAAAATTATTGAGAAAGAAGAGAGATTTTCAGATGATTTAATCGAGAATGCTTCAAATCAGCACAATACTACTAGGAGGTCACTTAGAAGAAAACCAGCCAAATCAGATTTTGTGCTTCGAGCAGGTTCTTCTATCCAAGCCAAGCTAAGGAGCTCTCGGTCTTCAAAATCTAAGAACACCTCTCGGTTTAGATTGTTTGATTCAGATGCTGAAGAAGAAGAAAAAGAACAGGATCAGGAAGACGAAGAAGAGGGGAGCAAAGGTGGGCCCAGCACTCGTCCAAGGAAAAGAACCCCAAAGCCAGTCAGAAAGTCAGAAGACAAACCAAAAGAGAAGAAGAGGAAGCAACCAAGTAAGAAAAAGGTTACAAACCGAAAAGAAGCTAAAATGAAAGGAGAAGAAGAAGAAGACGAATTGGGTTATGTTTGTGATATTGATGGGTGTTCAATGAGTTTTAGATCGAAAAATGAACTTGTTCTTCATAAAAAGAATATTTGTCCCTTAAAGGGCTGTGGGAAGAAGTTATTTTCGCACAAGTATCTTGTGCAGCATCGTAGGGTTCACGTGGATGAACGGCCACTTAAGTGTCCATGGAAGGGTTGTAAGATGAGCTTCAAATGGGCTTGGGCTCGTACAGAACATATCCGGGTCCACACAGGGGCCCGCCCGTATGTCTGTTCCGAGCCTGGGTGTGGTCAGACATTCAGATTCGTGTCGGATTTTAGTCGTCACAAGAGGAAGACGGGTCATTCCGTGAAGAAAGGTAGGAAGTGA 4485 43.12 MAASSLASEPTQEVFSWLRTLPLAPEYHPTLAEFQDPISYIFKIEKEASKYGICKIVPPVQPSSKKTAISNLNKSLLARSSSADPNNPKSPPTFTTRQQQIGFCPRKPRPIQKPVWQSGEYYTFQEFEVKAKSFEKNYLKKSARKGSGGGGGLSPLEIETLYWKATVDKPFRVEYANDMPGSAFIPISSSKKKMSKTGSRETGEGVSLGETDWNMRGVARAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVIRVHGYGGEINPLVTFAVLGEKTTVMSPEVFINAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEATNIATPEWLRFAKEAAIRRASINYPPMVSHFQLLYDLALALCSRKPEGMGSEPRSSRLKDKKKSEGETVIKELFVQNMETNNELLHTLGKGSSVVLLPWNSADISVCSKLRVGSHLRGNPPSFPPLGLCSSKESIKSSILDQGKDFYPLKGTFSSSSVHSVNGNDYSSSSKAKTLHAEGLSDQRLFSCVTCGILNFDCLAVIQPKEEAARNLMSADCSYFNDWVGGSMLPHNGGVERSVRDDVNDIPVHTLDEKILRKGEGVIAISNNDALGLLASTYGNSSDSEEEDQAGDNTANLVNGSRSESKNWYENSGLPSTCNQSLSCSKVNGADEKFNCSGQLEPTDDNGDSNVISCSNAGKNGTQQDDKSAIVPMEKNKHVSFFSRSDDDSSRLHVFCLEHAVEVEQQLQPIGGVHIMLLCHPDYPKIESEAKMVAEDLGIDRIWNDVTFRKATKEDEKTIQLALDNEEAINGNGDWAVKLGINLFYSANLSHSPLYIKQMPYNSVLYNAFGRSSPSFSSRKTEVYERRTGKQKRVVAGKWCGKVWMSNQVHPFLAKKDREGEYEEENDKNDDENDKSFFAWSMPNEKSGRKSETSTATTRKAPRKRKLTSSNLTNKKAKRVEPETVIFSEDLMEEDDHRPHSWRKQRTIKKPKFVEKEEAFSEDIEGGEEGNLCGQHRRNSMSKHVTYFETNDDVVISENSLGENEDAVSDQSHGYNDDHYRQYRRIPRTKQAKWTEREKEAVSDDSLGDEEESHLKSKQTKWNNNEDVDFSDEDSMEYDSHEQVHRGTRGKWIQGDDDMASDDLLRDRRIPERKWIERGDDFDDDDDDVASNYSLGDDPHQQGRRFPRKKQRDGGAILSDESMHNTNSSQHYKRVRRSKQMKIIEKEERFSDDLIENASNQHNTTRRSLRRKPAKSDFVLRAGSSIQAKLRSSRSSKSKNTSRFRLFDSDAEEEEKEQDQEDEEEGSKGGPSTRPRKRTPKPVRKSEDKPKEKKRKQPSKKKVTNRKEAKMKGEEEEDELGYVCDIDGCSMSFRSKNELVLHKKNICPLKGCGKKLFSHKYLVQHRRVHVDERPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCSEPGCGQTFRFVSDFSRHKRKTGHSVKKGRK 1494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35142677 35149109 + Conep02aG0198300.1 Cone2ag0949 433416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1197 1213 - -
Cone2ag0949 1494 FunFam Probable lysine-specific demethylase ELF6 1458 1487 - -
Cone2ag0949 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 1463 1487 IPR013087 -
Cone2ag0949 1494 ProSiteProfiles Zinc finger C2H2 type domain profile. 1461 1492 IPR013087 -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1053 1370 - -
Cone2ag0949 1494 FunFam Probable lysine-specific demethylase ELF6 17 380 - -
Cone2ag0949 1494 Gene3D Classic Zinc Finger 1398 1485 - -
Cone2ag0949 1494 ProSiteProfiles Zinc finger C2H2 type domain profile. 1401 1430 IPR013087 -
Cone2ag0949 1494 FunFam Probable lysine-specific demethylase ELF6 1428 1457 - -
Cone2ag0949 1494 SUPERFAMILY beta-beta-alpha zinc fingers 1449 1483 IPR036236 -
Cone2ag0949 1494 ProSiteProfiles Zinc finger C2H2 type domain profile. 1431 1460 IPR013087 -
Cone2ag0949 1494 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 999 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 635 672 - -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 78 98 - -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 647 672 - -
Cone2ag0949 1494 SUPERFAMILY beta-beta-alpha zinc fingers 1417 1457 IPR036236 -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1282 1296 - -
Cone2ag0949 1494 Coils Coil 911 931 - -
Cone2ag0949 1494 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1236 1251 - -
Cone2ag0949 1494 Gene3D Cupin 17 380 - -
Cone2ag0949 1494 SUPERFAMILY Clavaminate synthase-like 221 390 - -
Cone2ag0949 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 1433 1455 IPR013087 -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 911 975 - -
Cone2ag0949 1494 SMART JmjN_1 23 64 IPR003349 -
Cone2ag0949 1494 Pfam jmjN domain 25 58 IPR003349 -
Cone2ag0949 1494 Pfam JmjC domain, hydroxylase 241 358 IPR003347 -
Cone2ag0949 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 1403 1425 IPR013087 -
Cone2ag0949 1494 ProSiteProfiles JmjC domain profile. 207 376 IPR003347 -
Cone2ag0949 1494 SMART cupin_9 207 376 IPR003347 -
Cone2ag0949 1494 SMART c2h2final6 1401 1425 IPR013087 -
Cone2ag0949 1494 SMART c2h2final6 1431 1455 IPR013087 -
Cone2ag0949 1494 SMART c2h2final6 1378 1400 IPR013087 -
Cone2ag0949 1494 SMART c2h2final6 1461 1487 IPR013087 -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1133 1176 - -
Cone2ag0949 1494 MobiDBLite consensus disorder prediction 1066 1124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0949 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1358 Cone-Chr1:56577853 Cone2ag0949 Cone-Chr2:35142677 2.75E-148 dispersed
Cone2ag0949 Cone-Chr2:35142677 Cone5ag0347 Cone-Chr5:1480823 8.06E-146 dispersed
Cone12ag0485 Cone-Chr12:3169261 Cone2ag0949 Cone-Chr2:35142677 1.59E-68 transposed
Cone8ag0485 Cone-Chr8:3343402 Cone2ag0949 Cone-Chr2:35142677 3.08E-68 transposed
Cone16ag0052 Cone-Chr16:271626 Cone2ag0949 Cone-Chr2:35142677 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45740 PF07714 PK_Tyr_Ser-Thr 6.00E-46 CL0016 Cone TF