Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0950 ATGGAACTCTCTGAAGCTGTTTCCGTCTCATTAGGGCTTCCAGCTTCATCTTCTCGTGATTCCGATCTTGATCATGCAAGTTTCGATCCCGATCACACTGCTGCTGAGGAAAACGCCCTTCATGCGCAGCTTGAGAAGTTGGATTTGAAAGAGGCGAATTGTAATGGAGGTGATGAAGAAAATGCTGGTAGTAATAGCGAAGAAGAGAATGGTGGAGAATCTGGAGATCATGAATATGTGAACGCGAATGAGAATGAGAATGAAAATGAAGATAATGATGTGAATGGGGATGAGAAGGTAGGTGGTAGTGGTGATGATGAGGTAGGGAGGAAGGAGGGAGGCGAGAGGAGAGTGGTAAGTTATCACTATCCAGTTCGTCCTGACGCTGAAGATTGTGCTTATTACCTTAAGACTTGGAATTGTAAATTTGGATCCAACTGCAAGTTCAATCACCCTTATAGGAAGAAAGACCAGGCTGTCAAGGAAAAGGTAGAGGACAAAAAAGATTCAGCAGCACTAGCAAGCAACACAGAATGCAAGTACTACTCAAGGATAGGAGGTTGCAAGTATGGAAACTCCTGTAGATACAACCACCCAAAAGAAAAATATTCTGTAGCCCTAACTCTGGACCTAAACTTTCTGGGCTTACCTATTCGACCAGGTGAGAGAGAGTGCCCCTATTACATGCGAACCGGCTCCTGCAGATATGGGGCTAACTGCAGGTTTAATCATCCTGATCCTATGACTGTTGGAGCATCATCCGACTCTACATTAGGATATGATAATGGCGGGTCATCTCTCTCCTCCTTACAAGGCGCACCTCCGCCTGCTATTACATCCTGGTCTTCACCAAGAACAGTGATTGAAACTGCACCATATCCTCCTGTCATGGCCCTGCGAGGGGTTCCTTCCCAAAACCCAGAATGGAATGGATTTCAGGTTCCTATATATCCATCTTCCGGATACGTAATGAGTAAATCGTCAACTGAGATTGGTCTCTATAATGCATATCAGCAGCAACATGTGCAAGTAGAAGAATTTCCAGAAAGACCTGGTCATCCTGAATGCACTTTCTTCCTGAAAACAGGGGACTGTAAGTTCAAATCTAGTTGCAAATATCACCACCCAAAAAATCGGATTTCTAGGTCAACCCCATGCACTCTTAGTGAGAAGGGCCTCCCTCTTAGACCTGATCAGAATGTCTGCACCCATTACAGCCGCCATGGAATCTGCAAATTCGGGCCGGCTTGTAGATATGATCATCCTATCGACCTAATTCCTTCAAGTGGACTCGAAAATGTTGACCCGGCAGGGGCAGAATCGTCCAGGGTTGTAGGTGGAAACAATGCTGCGATTCAGCAGTCTGTGTAG 1371 45.51 MELSEAVSVSLGLPASSSRDSDLDHASFDPDHTAAEENALHAQLEKLDLKEANCNGGDEENAGSNSEEENGGESGDHEYVNANENENENEDNDVNGDEKVGGSGDDEVGRKEGGERRVVSYHYPVRPDAEDCAYYLKTWNCKFGSNCKFNHPYRKKDQAVKEKVEDKKDSAALASNTECKYYSRIGGCKYGNSCRYNHPKEKYSVALTLDLNFLGLPIRPGERECPYYMRTGSCRYGANCRFNHPDPMTVGASSDSTLGYDNGGSSLSSLQGAPPPAITSWSSPRTVIETAPYPPVMALRGVPSQNPEWNGFQVPIYPSSGYVMSKSSTEIGLYNAYQQQHVQVEEFPERPGHPECTFFLKTGDCKFKSSCKYHHPKNRISRSTPCTLSEKGLPLRPDQNVCTHYSRHGICKFGPACRYDHPIDLIPSSGLENVDPAGAESSRVVGGNNAAIQQSV 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35149649 35152719 + Conep02aG0198400.1 Cone2ag0950 433417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0950 456 Gene3D - 338 424 - -
Cone2ag0950 456 ProSiteProfiles Zinc finger C3H1-type profile. 396 424 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SUPERFAMILY CCCH zinc finger 125 155 IPR036855 GO:0046872(InterPro)
Cone2ag0950 456 MobiDBLite consensus disorder prediction 22 55 - -
Cone2ag0950 456 MobiDBLite consensus disorder prediction 434 456 - -
Cone2ag0950 456 SMART c3hfinal6 219 246 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SMART c3hfinal6 350 377 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SMART c3hfinal6 396 423 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SMART c3hfinal6 126 153 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SMART c3hfinal6 174 200 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 SUPERFAMILY CCCH zinc finger 395 422 IPR036855 GO:0046872(InterPro)
Cone2ag0950 456 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 PANTHER PROTEIN PHOSPHATASE RELATED 42 423 IPR050974 GO:0003729(PANTHER)
Cone2ag0950 456 SUPERFAMILY CCCH zinc finger 354 379 IPR036855 GO:0046872(InterPro)
Cone2ag0950 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 377 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 398 422 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 152 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 200 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 MobiDBLite consensus disorder prediction 70 84 - -
Cone2ag0950 456 MobiDBLite consensus disorder prediction 94 113 - -
Cone2ag0950 456 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872(InterPro)
Cone2ag0950 456 MobiDBLite consensus disorder prediction 1 113 - -
Cone2ag0950 456 SUPERFAMILY CCCH zinc finger 222 246 IPR036855 GO:0046872(InterPro)
Cone2ag0950 456 Gene3D - 169 255 - -
Cone2ag0950 456 Gene3D - 71 164 - -
Cone2ag0950 456 SUPERFAMILY CCCH zinc finger 176 203 IPR036855 GO:0046872(InterPro)
Cone2ag0950 456 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0950 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0208 Cone-Chr13:1335271 Cone2ag0950 Cone-Chr2:35149649 4.26E-53 dispersed
Cone2ag0950 Cone-Chr2:35149649 Cone5ag0933 Cone-Chr5:3992290 7.79E-24 dispersed
Cone16ag0051 Cone-Chr16:266827 Cone2ag0950 Cone-Chr2:35149649 3.25E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45741 PF04770 ZF-HD_dimer 1.20E-25 No_clan Cone TF