Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0952 ATGGTGTTCTCCTTCCCATCTCACTCTAATACCATTCTACTCATTTCCCTTACCACCCTCTGCACAATCTTCACTCTCTCCTCCTCTTCTTCCTCTTCTTCTTCTTCTTCTTCATCTAATCCCAATAATACACCTCCATTCAAAAAGATCTATGCATTTGGAGACTCATTCACAGACACCGGCAACACGAAATCCATAACAGGCCCCACCGGGTTTGGCCACGTGTCCAGCTCTCCTTACGGTATCACCTACTTCCACCGCCCGACAAACCGCTACTCAGACGGCCGCCTCGTCATTGACTTCATAGCAGAATCCTTGTCCTTACCTTTCCTCCCTCCGTACAAAAACTTGGACAAAGGCAACAAAACTTCAAGTGAACATGGAGTTAACTTTGCGGTTGCGGGGTCCACAGCTATAAGGCACGAGTTCTTCGTGAAGAACAACCTTAGTCTCGATATAACTCCGGAGAGTATTGGGACCCAGCTCGTTTGGTTCAAGAAGTATTTGGAGGAGAGTGAAGGAAATGGAGGTGGATTTGATGATGCTCTTTTCTGGGTTGGTGAGATCGGAGTCAATGATTATGCTTATACAGTTGGATCTTCTATTCCAGATTATGTTATTAGAAAGCTTGGAGTTGCTAGTGTCATTAATTTTCTTCAGTCAATCCTAAAGAAAGGTGCAAAATATGTCCTAGTCCAAGGTCTACCGCCCTCTGGGTGCTTACCCTTGGCTATGTCACTAGCTGCAGTAGATGACCGGGACGATGTCGGGTGCGTAAAAAGCGTGAACAATCAAACCTACACACACAATCTTGCCTTACAAGCCAAGTTACAATACCTAAGAAAGCAATTCCCACAAGCTACAATCACCTATGCTGATTATTGGAATGCTTATCGGACCGTTATGAAGAACCCTAGCCATTTCAGTTTTCAAGAGCCCTTCAAAGCTTGTTGTGGGTCCGGAGAACCCTACAATTTCGATATCTTTTCGGTTTGTGGTAGCCGGCCTTCTGTTACTGCCTGTAAATCTCCATCTCAGTATATAAATTGGGATGGAGTTCATCTGACTGATGCTATGTATAAAGTACTTTCCAATATGTTTATTCAGGGAAATTTCACTAACCCTCAGTTCAGTAACTTGTTTGACAAGAAACCGCGACGTGGATGA 1167 44.3 MVFSFPSHSNTILLISLTTLCTIFTLSSSSSSSSSSSSSNPNNTPPFKKIYAFGDSFTDTGNTKSITGPTGFGHVSSSPYGITYFHRPTNRYSDGRLVIDFIAESLSLPFLPPYKNLDKGNKTSSEHGVNFAVAGSTAIRHEFFVKNNLSLDITPESIGTQLVWFKKYLEESEGNGGGFDDALFWVGEIGVNDYAYTVGSSIPDYVIRKLGVASVINFLQSILKKGAKYVLVQGLPPSGCLPLAMSLAAVDDRDDVGCVKSVNNQTYTHNLALQAKLQYLRKQFPQATITYADYWNAYRTVMKNPSHFSFQEPFKACCGSGEPYNFDIFSVCGSRPSVTACKSPSQYINWDGVHLTDAMYKVLSNMFIQGNFTNPQFSNLFDKKPRRG 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35158003 35159275 + Conep02aG0198600.1 Cone2ag0952 433419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0952 388 CDD SGNH_plant_lipase_like 50 371 IPR035669 -
Cone2ag0952 388 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 22 365 - -
Cone2ag0952 388 SUPERFAMILY SGNH hydrolase 46 368 - -
Cone2ag0952 388 Gene3D SGNH hydrolase 36 371 IPR036514 -
Cone2ag0952 388 Pfam GDSL-like Lipase/Acylhydrolase 50 364 IPR001087 GO:0016788(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0952 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0199 Cone-Chr1:1200393 Cone2ag0952 Cone-Chr2:35158003 2.91E-63 dispersed
Cone2ag0952 Cone-Chr2:35158003 Cone5ag1671 Cone-Chr5:11864288 3.27E-71 dispersed
Cone16ag0952 Cone-Chr16:9607882 Cone2ag0952 Cone-Chr2:35158003 7.47E-42 wgd
Cone16ag0048 Cone-Chr16:259437 Cone2ag0952 Cone-Chr2:35158003 2.12E-242 wgd
Cone19ag1071 Cone-Chr19:7839857 Cone2ag0952 Cone-Chr2:35158003 2.77E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34