Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0953 ATGAAAGCAGCCATAGTCATCACCTCATCTCTTCTTGTCTTGCTTTCTCTTTCGGTTCATGAATTTGTCTTAGCTTCTTCTTCATCAAATACTTCAGAGAAAAGCAAGGAACCGGAGCTTGTACATGGAGTACATTGTTCCCGAGAAAGAAGTCGGACGGCCTGGAATATTATTCAGGAGTATTTGATGCCATTTGTGGAGAAGGAGAAGTATCAGCTTTCGAGCAAGTGTAGGCTTCATCCTGACAATGATATGTTTAGAGATCATGAGCAACACAAGATTCATATGGATGTAAATGAGTGGCAATGTGGATATTGTAAGAAAAGCTTCCATGCCGGGAAATTTCTTGATCAGCATTTTGACAGTCGACACTCCGACCTTCTTAATGCTAGCCAGAGCAGCTGCTTGGCCGATCTATGTGGGGCATTGCATTGTGACCTCGTGATGAATACCAAGTCACCAAAATCCAAGTGCAATCCGGCAGCAGCTGCAAGGAACCGGCACCTCTGTGAGAGTCTTGCGGATAGCTGTTTCCCCATCCATAATGGTCCCTCAGCTAGCCGTCTTAATGAAGCAAACAAGTGTCTTTTACCTATCCATGGCGATTCTGACAATGATGCTGCTTCCTCTTTTCTATATCCTCGTTTATTTGCACCAGAGAGAAAAGAGAAATGGAACCCAAAATCTCAAGCGCATCTCGAAAGTTGGATGGAAAGCAAAGCCCTCATAACGTGTATCGAGCTTAGGAGTTTGAAATATACTCCATTCGTTGATACTCAAAACAAATCGGAAGGAAGCAAACAAATCGGAAAACGGAATCGTACAACTCAAATACGACCCGTCCCGGCTTCATATTTTTTCCACCACCCGAGTCTGCATTTGTTGTGGAAAAAAAGTATAGGTGAAGATATTATTGCAGCTAAAAGTGAGAGTCATGCAGGTGGCGGTATAGTGGCTGTGGAGGCGAAGGTGGAGGGATTGCTGGGGGTCATAGTCGGCGAGCACGAGCCTGAGGAGAATCTGATGAATCGGTTCAGAAGAGAGGTCTTGAAAGCAGGCGTGTTGCAGGAATGTAAGGGGCGGAGATTCTTCGAGAACATGCGGGAGAAGAAGAAGAGGAAAGAGAATCAGAGATTGTTGTTTATCGAGTTCATGGCTTGA 1161 44.79 MKAAIVITSSLLVLLSLSVHEFVLASSSSNTSEKSKEPELVHGVHCSRERSRTAWNIIQEYLMPFVEKEKYQLSSKCRLHPDNDMFRDHEQHKIHMDVNEWQCGYCKKSFHAGKFLDQHFDSRHSDLLNASQSSCLADLCGALHCDLVMNTKSPKSKCNPAAAARNRHLCESLADSCFPIHNGPSASRLNEANKCLLPIHGDSDNDAASSFLYPRLFAPERKEKWNPKSQAHLESWMESKALITCIELRSLKYTPFVDTQNKSEGSKQIGKRNRTTQIRPVPASYFFHHPSLHLLWKKSIGEDIIAAKSESHAGGGIVAVEAKVEGLLGVIVGEHEPEENLMNRFRREVLKAGVLQECKGRRFFENMREKKKRKENQRLLFIEFMA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35159780 35163597 + Conep02aG0198700.1 Cone2ag0953 433420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0953 386 Pfam Ribosomal protein S21 330 378 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone2ag0953 386 NCBIfam 30S ribosomal protein S21 330 377 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone2ag0953 386 ProSitePatterns Zinc finger C2H2 type domain signature. 103 124 IPR013087 -
Cone2ag0953 386 Gene3D Ribosomal protein S8 342 378 IPR038380 -
Cone2ag0953 386 PANTHER ZINC FINGER PROTEIN-RELATED 2 192 - -
Cone2ag0953 386 PRINTS Ribosomal protein S21 family signature 339 348 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone2ag0953 386 PRINTS Ribosomal protein S21 family signature 331 339 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone2ag0953 386 PRINTS Ribosomal protein S21 family signature 351 361 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone2ag0953 386 PRINTS Ribosomal protein S21 family signature 363 373 IPR001911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0989 Cone-Chr16:9743748 Cone2ag0953 Cone-Chr2:35159780 9.61E-12 transposed
Cone16ag0965 Cone-Chr16:9655090 Cone2ag0953 Cone-Chr2:35159780 5.64E-78 wgd
Cone16ag0045 Cone-Chr16:247764 Cone2ag0953 Cone-Chr2:35159780 2.71E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0953 - - - 0.0