Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0956 ATGGAGATTGTAGCAGTGTCTGGTGGAGTGAGTCCTTCATGTTCTCTCTGCTCACCAAGAGCTCAAAGCTTAAGCTCTGGAAGTTTTTCCTGCACACATAAGTCTATACTACGTACCACCAATCACCATTTTTTTCAGCTCTCAGCATTCCATTCAAAATCCCATCTTTTCTCGTCTTCCCCATCCAGTCCTCATGCTAGAATACGCACTCTCAAACCTCGTATCTTCCTCCCTCACCTGGTCGCCTCCCTGGAGCAAGTGGAAGAGACTTACATAATGGTCAAACCTGATGGAGTTCAACGCGGTCTTGTGGGAGAGATTATTTCCAGATTCGAGAAGAAGGGATTTAAACTTACCGGCTTGAAGCTCTTCAAATGCCCCAAAGATTTGGCTGAGGAGCATTATAAAGATCTTAAGGCCAAGTCTTTCTTCCCTAAGCTAATTGGTTACATCACATCGGGTCCTGTTGTATGCATGGCATGGGAAGGAGTTGGCGTTGTGGCATCGGCCCGGAAGCTGATTGGATCCACGGACCCACTTCAAGCTGACCCAGGAACAATAAGAGGAGACCTTGCCGTCCAAACTGGAAGGAATGTGATTCATGGAAGTGATAGCCCGGAAAATGGGAAGCGTGAAATAGGTCTATGGTTTAACGAAGGTGAAAAATGTGATTGGTCACCGATCCTAGCACCATGGCTGAGGGAGTGA 708 47.03 MEIVAVSGGVSPSCSLCSPRAQSLSSGSFSCTHKSILRTTNHHFFQLSAFHSKSHLFSSSPSSPHARIRTLKPRIFLPHLVASLEQVEETYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFKCPKDLAEEHYKDLKAKSFFPKLIGYITSGPVVCMAWEGVGVVASARKLIGSTDPLQADPGTIRGDLAVQTGRNVIHGSDSPENGKREIGLWFNEGEKCDWSPILAPWLRE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35170073 35172434 - Conep02aG0199000.1 Cone2ag0956 433423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0956 235 SMART ndk_5 87 224 IPR034907 -
Cone2ag0956 235 Pfam Nucleoside diphosphate kinase 88 221 IPR034907 -
Cone2ag0956 235 Gene3D - 83 235 IPR036850 -
Cone2ag0956 235 PRINTS Nucleoside diphosphate kinase signature 198 217 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 PRINTS Nucleoside diphosphate kinase signature 175 191 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 PRINTS Nucleoside diphosphate kinase signature 90 112 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 PRINTS Nucleoside diphosphate kinase signature 134 153 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 PRINTS Nucleoside diphosphate kinase signature 154 171 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 79 234 - GO:0004550(PANTHER)
Cone2ag0956 235 Hamap Nucleoside diphosphate kinase [ndk]. 87 222 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cone2ag0956 235 SUPERFAMILY Nucleoside diphosphate kinase, NDK 87 233 IPR036850 -
Cone2ag0956 235 CDD NDPk_I 88 217 - -
Cone2ag0956 235 FunFam Nucleoside diphosphate kinase 84 235 - -
Cone2ag0956 235 ProSitePatterns Nucleoside diphosphate kinases active site. 198 206 IPR023005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0956 K00940 - - mdm:114825364 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0972 Cone-Chr18:7114877 Cone2ag0956 Cone-Chr2:35170073 5.86E-62 dispersed
Cone2ag0956 Cone-Chr2:35170073 Cone6ag0854 Cone-Chr6:4363167 1.03E-55 dispersed
Cone16ag0039 Cone-Chr16:225534 Cone2ag0956 Cone-Chr2:35170073 2.47E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g915 . Blo16g00253 . . . Bpe13g00213 Bma06g00246 . Cmo13g00816 Cmo18g00193 . . . . . Cpe20g00326 . . . . . . . . . . . . . . . Cone2ag0956 Cone16ag0039 . . Lsi02g00476 Csa01g00935 Chy12g01193 Cme12g01615 . . Bda11g01612 . . . . . . . . Cma13g00784 Cma18g00217 Car13g00633 Car18g00211 Cpe09g00980 . . . . . . . . Cla03g00334 Cam03g0349 Cec03g0340 Cco03g0355 Clacu03g0350 Cmu03g0956 Cre03g0649 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008226 2 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35