Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0959 ATGGGATCAGTGGGAGCATACGGTTACAATCATGCACTCTCAACAAAGAAGACGATGATGCTGATCAAGGGCTACGATCTTCCGGAAGGAGTCGAGATTCGAGGAAGATACGACGAAGAATTCGCCAAGATCCTAAGCAGAGACGCGCTAGGATTCGTTGCGGATTTGCAGAGGGAGTTCAGGAACCATATCAAGTATGCAATGGAGTGTAGGAGAGAGGCCAAGAGGAGGTACAATGAGGGCGCGCTGCCTGCCTCTGATCCTGCCACTACATACATCAGGGACGGTGATTGGACCTGCGCTCCGGTACCACCTGCTGTTGCTGATCGGAGGGTCGAGATTACCGGTCCTGTTGAGAGGAAGATGATCATCAATGCACTCAATTCTGGTGCTAAAGTCTTCATGGCAGACTTTGAAGATGCGTTGTCACCAAGCTGGGAGAACTTAATGAGGGGCCAAGTGAATTTGAAAGATGCAGTGAATGGGACTATAAGCTTCCATGACAAGGCTAGAAACAGAGAATACAAGCTGAACGATGAGAACGAGATAGCCAAGCTTTTCGTGCGCCCGAGAGGGTGGCATTTGCCTGAGGCTCACATTTTCATTGATGGTGAACCGGCCACCGGCTGTCTCGTTGATTTTGGGCTCTATTTCTACCACAACCATGCTCGGTTTCGCCTCTCGCAAGGCCAAGGTTTCGGACCCTTTTTCTATCTCCCCAAAATGGAGCATTCAAGGGAGGCAAAAATATGGAACAATGTGTTTGAGAGAGCCGAGAAGAAGGTAGGGATAGAGAGGGGAAGCATAAGGGCAACGGTGCTGATCGAAACACTTCCGGCAGTGTTTCAAATGGATGAGATTCTTTATGAACTAAGGGATCATTCTGTAGGGTTGAACTGTGGAAGATGGGATTACATTTTCAGCTACGTCAAGACCTTCCAGGCTCACCCTGACCGCTTATTGCCCGACAGGGTTCAAGTCGGCATGACCCAACATTTCATGAGGAGTTACTCCGATCTCCTCATCCGGACTTGTCATCGCCGTGGGGTCCATGCCATGGGTGGCATGGCAGCACAAATTCCGATCCGGGACGATCCAAAGGCGAATGACGCAGCATTGGAGCTTGTAAGGAAGGACAAGCTGAGAGAGGTAAGAGCGGGGCATGACGGAACATGGGCTGCCCATCCTGGCTTGATCCCAGCCTGCATGGAAGTCTTCACCAACAACATGAGCAAGGTCAATGCTCCTAACCAAATCCAATCTGTAAAGCGTGAGGATGCAACAAACATCACCGAAGAGGACCTCCTACAAATCCCAAGAGGAGTGCGGACCATGAACGGTCTCAGACTGAACACCCGTGTCGGGATCCAATACCTAGCTGCTTGGTTAACCGGAAGTGGGTCGGTCCCGCTTTACAATCTCATGGAAGATGCAGCCACAGCTGAGATTAGTAGGGTTCAAAATTGGCAATGGTTGAAGTATGGAGTTGAATTGGATGGTGATGGCCTTGGGGTGAGAGTGAGTAAGGAGATTTTTGGCAGAGTCGTGGAGGAGGAAATGGAAAGGATTGAGAGGGAAGTTGGGAAGGAAAGGTTTAAGAAAGGAAAGTACACGGAGGCTAAGAAGATGTTCACTAGGCAATGCACAGCTCCAACATTGGATGATTTCCTGACCTTGGATGCTTATAACCATATCGTCATACATCATCCGACCGTATCGTCCAGGCTCTAA 1731 49.68 MGSVGAYGYNHALSTKKTMMLIKGYDLPEGVEIRGRYDEEFAKILSRDALGFVADLQREFRNHIKYAMECRREAKRRYNEGALPASDPATTYIRDGDWTCAPVPPAVADRRVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVNGTISFHDKARNREYKLNDENEIAKLFVRPRGWHLPEAHIFIDGEPATGCLVDFGLYFYHNHARFRLSQGQGFGPFFYLPKMEHSREAKIWNNVFERAEKKVGIERGSIRATVLIETLPAVFQMDEILYELRDHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMRSYSDLLIRTCHRRGVHAMGGMAAQIPIRDDPKANDAALELVRKDKLREVRAGHDGTWAAHPGLIPACMEVFTNNMSKVNAPNQIQSVKREDATNITEEDLLQIPRGVRTMNGLRLNTRVGIQYLAAWLTGSGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVRVSKEIFGRVVEEEMERIEREVGKERFKKGKYTEAKKMFTRQCTAPTLDDFLTLDAYNHIVIHHPTVSSRL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35182163 35184548 - Conep02aG0199300.1 Cone2ag0959 433426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0959 576 FunFam Malate synthase 442 566 - -
Cone2ag0959 576 PANTHER MALATE SYNTHASE 27 570 IPR006252 GO:0004474(PANTHER)|GO:0004474(InterPro)|GO:0005737(PANTHER)|GO:0006097(InterPro)|GO:0006097(PANTHER)
Cone2ag0959 576 Pfam Malate synthase, TIM barrel domain 185 438 IPR001465 GO:0004474(InterPro)|GO:0006097(InterPro)
Cone2ag0959 576 FunFam Malate synthase 27 441 - -
Cone2ag0959 576 Gene3D Malate synthase, domain III 442 566 IPR044856 -
Cone2ag0959 576 Gene3D Malate synthase, domain 3 28 441 IPR046363 -
Cone2ag0959 576 NCBIfam malate synthase A 44 565 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Cone2ag0959 576 Pfam Malate synthase, C-terminal 443 565 IPR048355 -
Cone2ag0959 576 CDD malate_synt_A 44 566 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Cone2ag0959 576 PIRSF Malate_synth 22 567 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Cone2ag0959 576 ProSitePatterns Malate synthase signature. 292 307 IPR019830 GO:0004474(InterPro)|GO:0006097(InterPro)
Cone2ag0959 576 SUPERFAMILY Malate synthase G 25 567 IPR011076 GO:0003824(InterPro)
Cone2ag0959 576 Pfam Malate synthase, N-terminal domain 29 92 IPR048356 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0959 K01638 - - csv:101214523 1013.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0033 Cone-Chr16:203104 Cone2ag0959 Cone-Chr2:35182163 1.18E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g152 . . . . . Bpe13g00208 . . Cmo13g00822 . . . . . . Cpe20g00320 . . . . . . . . . . . . . . . Cone2ag0959 . . . Lsi02g00483 . . . . . Bda11g01607 . . . . . . . . Cma13g00791 . Car13g00639 . . . . . . . . . . Cla03g00340 Cam03g0355 Cec03g0346 Cco03g0361 Clacu03g0356 Cmu03g0961 Cre03g0654 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012250 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29