Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0968 ATGGTTTCAACAAGAAGAAGTGGATCTCTCCCTACTAATAACAGCGGAAAAAGATCTTCCTCCTCTGATGATAAACCGCCTTCGCCGAAGCGTCAAAAGGCTGATAATAATGGCGTTGCATCCGAGAAACCGGCGCAGGTGATGGAGGATTCTAAGGAATTGTGTACGCCGGCGGGGGATCCTGAGGAATGTGGTCCCAGCGAAACTCCGATCTCCAGAGCTGGAGGTGGAGAGGGTGTGAGCTCTGCAAAGGGTGAGGTTGCTCCACCTGCCGTGCCTTTGGCCTCGCCGATCTCTGAAGGAAATTCGTTGATGATGGATAAACCAAAGGGTTCATTCCCTTCCTGGAATCTGAATCCTCCAAAGCATAACGCCAACTTTGAAACGTCAACGCCTTGGTGCAAACTTCTCTCACAGTTTGCGCCAAATCCAGACATTTCTATTTCTTCTTCAAGTTTCACAGTTGGCTCTAGTAGAAGTTGTAATTTATCATTGAGGGATCATACAGTTAGTGGAACTCTATGCAGAATCAAGCACACACAGCAGGGAGGCAGTGCCTGTGCTGTTCTAGAAATTACTGGGAGCAAGGGGTCAATGCTGGTAAATGGGACACCTGTCAAGAAAAGTTCCACTATTACACTCAACTCAGGCGATGAGTTGATTTTTGGCACTCTAGGAGTCCATGCTTATGTTTTTCAACAACTTATGGTTGAGATTACAGCTAAACGTTCAGAGGTTCAGAGTGGTGCCGGAAAATTATTTCAGTTTGGAAGGAGGACTGGGGATCCGTCAGCTGTGGCTGGGGCCTCTATCTTGGCATCCCTCTCTAGCCTGAGACAGGATCTATCAAGTTGGAAGCCTCCTCAGCCTAGCAGCAAAATGCCCCAGGCTGCTGAGTTGCCTTCTCCTTCTGTTATACATGAAGATGTCGAAGTTGAGATAGATGGGACAGAAACCAACTCTACTCCAGAAGTTGCAGATGATAAAGCAGCAGAGACAGGAGCAACCAACAAGAAACCTGCTGCTGAGTGCATCATCGACTCTAGCTTAGAGGTATTGGAAGAAAGAAACGAGTGGACGGGGGATCTGCAGCCAATGTCAATGCCGGGTTCTTCTGTGCGGAGTGCGATGTTCAAAGAAGAGATTCATGCAGCAATTCTTGATGCTAAAGACATAAAAGTTTCATTTGACGATTTCCCATACTATTTAAGTGAGAATACAAAAACTGTGCTAATTACAGCTGCTTTTATACACTTGAAGCGTAAGGACTATGCTAAGTATACCTCAGAGCTGACTACAGTGAACCCAAGAATATTACTGTCTGGTCCTGCAGGATCAGAAATATATCAGGAGATGTTAACAAAGGCACTGGCTAATTACTTTGAGGCTAAGCTGCTCATATTTGATAGCCATTCCTTTTTGGGTGGTTTGTCATCAAAGGAAGCAGAACTGCAGAAGGATGGGGTTAATGCAGAGAAATCCTTCAACTTTACAAAACAAAGTTCCATATCCACTGACATGACAAAGGGCACAGATCCATCAACTGGTGAAGAAGATACACCTAGTTCTTCAAATGCTCCTTCTTTTGGCTTGGAGTCTCAACCAAAGATGGAGAATGATGCAGTACCCTCTTCCTCTGGGCCACCTAAGAATTACGTATTCAAAGTTGGTGATAGAGTGAGATATATAGGCTCAACTTCTGGTAGTTTGTATACATCTCCTTCGAGGAGCCCACCAAATGGATCTCGTGCAAAGGTTGTCTTAACTTTTGAAGACAACTCCTTGTCAAAGGTAGGTATAAAGTTTGATAAACCCATAGGAGGTGGAGTTGATCTTGGGGGTCTCTGTGAAGGAGGCTATGGATTCTTCTGTAATGCTGCGGAACTTCGTTTGGAGAGCTCAGGCATGGAGGAAATGGACAAGATACTTATCAACACATTGTTTGAGGCCGTGTGTAGTGAGAGCAGAAGTTCTCCTTTCATTTTGTTCATGAAAGATGCCGAGAAGTCACTTGTGGGAAATTCAGATTCATATTCTGGTTTTAAAAGCAGACTGGAGAAGCTTCCTAATAATGTTATCGTAATTGGTTCACATACACATACTGACAATCGTAAAGAGAAGTCACATACTGGTGGTCTACTTTTCACAAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCTTTTCCAGATAGTTTTGGAAGACTGCAAGACAGAGGAAAGGAAGTTCCAAAGACAACAAAACTTCTCTCTAAACTTTTTCCCAACAAAGTCATCATCCACATGCCACAGGAGGAGGGACTTCTGGTGTCATGGAAGCACCAACTAGATCAAGATGCTGAAACTCTCAAAATGAAGGGAAATTTGAATCATCTTCGTTCAGTATTGAGTCGGAGTGGAATGGACTGTGAAGGACTTGAGGCACTATGCATCAAGGAACAAACACTTACGAATGAGAGTGCAGAAAAGGTTGTTGGGTGGGCCTTAAGCCATCATTTAATGCAGAATCCTGAGGTTGATCCCGAGACGAGAATTATTTTGTCCAGCGAGAGCATTCAATACGGGATTGGTATCTTACACTCTATCCAGAACGAAAATAAGAGTGCGAAGAAGTCACTTAAGGATGTCGTGACAGAAAATGAATTCGAGAAAAGGCTTTTGGCTGATGTTATACCTCCTAGTGACATAGGAGTTACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTTTAAAGGAGCTGGTCATGCTTCCTCTGCAAAGGCCTGAACTATTCTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATACTATTATTTGGCCCTCCTGGAACAGGAAAGACGATGCTTGCGAAGGCTGTGGCTACTGAAGCCGGTGCAAATTTTATTAACATTTCCATGTCTAGTATAACATCCAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCCGTTTTCTCTCTAGCCAGTAAAATAGCCCCAAGTGTCATTTTTGTCGATGAAGTTGACAGCATGTTGGGTCGGCGGGAAAATCCAGGGGAGCATGAAGCTATGCGAAAGATGAAAAATGAATTTATGGTAAATTGGGATGGACTACGGACAAAAGATACAGAGCGAGTGCTTGTACTTGCCGCCACAAATAGGCCTTTTGACCTTGATGAGGCTGTTATTCGAAGGCTTCCTCGCAGATTGATGGTAAATTTGCCAGATCCTCCAAATCGGGCTAAGATACTAAAGGTTATATTGGCAAAAGAGGATTTGTCGCATGATATTGATTTTGATGCAATTGCAAATATGACGGATGGATATTCTGGAAGTGACCTGAAGAATCTATGCGTTGCTGCCGCCCACCGCCCGATCAAAGAGATATTAGAAAAGGAAAAAAAGGAGCATGCTGTGGCTCTGGCAGAAGGCAGACCAGCACCAGCACTCAGTAAAAGTGCCGATATACGACATCTAAACATGGATGATTTTAAGCTTGCTCATGAACAGGTATGTGCAAGTGTTTCATCCGAGTCTGTAAACATGACCGAGCTTCTACAATGGAATGAGATGTATGGGGAAGGGGGTTCTAGAAGAAAGAAGGCTCTTAGTTACTTCATGTGA 3615 43.93 MVSTRRSGSLPTNNSGKRSSSSDDKPPSPKRQKADNNGVASEKPAQVMEDSKELCTPAGDPEECGPSETPISRAGGGEGVSSAKGEVAPPAVPLASPISEGNSLMMDKPKGSFPSWNLNPPKHNANFETSTPWCKLLSQFAPNPDISISSSSFTVGSSRSCNLSLRDHTVSGTLCRIKHTQQGGSACAVLEITGSKGSMLVNGTPVKKSSTITLNSGDELIFGTLGVHAYVFQQLMVEITAKRSEVQSGAGKLFQFGRRTGDPSAVAGASILASLSSLRQDLSSWKPPQPSSKMPQAAELPSPSVIHEDVEVEIDGTETNSTPEVADDKAAETGATNKKPAAECIIDSSLEVLEERNEWTGDLQPMSMPGSSVRSAMFKEEIHAAILDAKDIKVSFDDFPYYLSENTKTVLITAAFIHLKRKDYAKYTSELTTVNPRILLSGPAGSEIYQEMLTKALANYFEAKLLIFDSHSFLGGLSSKEAELQKDGVNAEKSFNFTKQSSISTDMTKGTDPSTGEEDTPSSSNAPSFGLESQPKMENDAVPSSSGPPKNYVFKVGDRVRYIGSTSGSLYTSPSRSPPNGSRAKVVLTFEDNSLSKVGIKFDKPIGGGVDLGGLCEGGYGFFCNAAELRLESSGMEEMDKILINTLFEAVCSESRSSPFILFMKDAEKSLVGNSDSYSGFKSRLEKLPNNVIVIGSHTHTDNRKEKSHTGGLLFTKFGSNQTALLDLAFPDSFGRLQDRGKEVPKTTKLLSKLFPNKVIIHMPQEEGLLVSWKHQLDQDAETLKMKGNLNHLRSVLSRSGMDCEGLEALCIKEQTLTNESAEKVVGWALSHHLMQNPEVDPETRIILSSESIQYGIGILHSIQNENKSAKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDPPNRAKILKVILAKEDLSHDIDFDAIANMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKEHAVALAEGRPAPALSKSADIRHLNMDDFKLAHEQVCASVSSESVNMTELLQWNEMYGEGGSRRKKALSYFM 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35213306 35222035 - Conep02aG0200200.1 Cone2ag0968 433435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0968 1204 Pfam AAA+ lid domain 1093 1134 IPR041569 -
Cone2ag0968 1204 SMART AAA_5 936 1073 IPR003593 GO:0016887(InterPro)
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 500 552 - -
Cone2ag0968 1204 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 898 1073 - -
Cone2ag0968 1204 Gene3D - 1072 1166 - -
Cone2ag0968 1204 Pfam ATPase family associated with various cellular activities (AAA) 940 1070 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 1 103 - -
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 316 337 - -
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 500 546 - -
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 282 298 - -
Cone2ag0968 1204 SUPERFAMILY SMAD/FHA domain 132 232 IPR008984 GO:0005515(InterPro)
Cone2ag0968 1204 Gene3D - 132 241 - -
Cone2ag0968 1204 CDD RecA-like_ATAD1 903 1069 - -
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 1 22 - -
Cone2ag0968 1204 ProSitePatterns AAA-protein family signature. 1043 1062 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0968 1204 MobiDBLite consensus disorder prediction 282 301 - -
Cone2ag0968 1204 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 145 1204 IPR051701 GO:0005741(PANTHER)
Cone2ag0968 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1181 IPR027417 -
Cone2ag0968 1204 Coils Coil 860 880 - -
Cone2ag0968 1204 Gene3D - 898 1179 IPR027417 -
Cone2ag0968 1204 Pfam FHA domain 154 223 IPR000253 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0968 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0376 Cone-Chr17:1784801 Cone2ag0968 Cone-Chr2:35213306 7.78E-154 dispersed
Cone20ag0940 Cone-Chr20:6747071 Cone2ag0968 Cone-Chr2:35213306 0 dispersed
Cone20ag1039 Cone-Chr20:7227325 Cone2ag0968 Cone-Chr2:35213306 3.98E-159 dispersed
Cone2ag0968 Cone-Chr2:35213306 Cone9ag0819 Cone-Chr9:3950168 6.79E-180 dispersed
Cone13ag0220 Cone-Chr13:1410552 Cone2ag0968 Cone-Chr2:35213306 0 wgd
Cone16ag0990 Cone-Chr16:9745441 Cone2ag0968 Cone-Chr2:35213306 4.49E-62 wgd
Cone16ag0024 Cone-Chr16:161078 Cone2ag0968 Cone-Chr2:35213306 0 wgd
Cone19ag0203 Cone-Chr19:1277344 Cone2ag0968 Cone-Chr2:35213306 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53