Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0017 ATGGGTAATAGTAGAACTGTCAAATTTGGTTTAGAGGATGTCAATAAGTTGGTGGATGAGATGCCAAGCTTCGGTTCACAGATGCCCTCTTCTAATCCCATTGGTGCAGAGGGAAACACTGTTCCTTCTTTTCGAGTTTCAGATTTCAGAGTGCTCGAGCAATCTCTTGGCTTTCGTATAGAGGATATTACAAGAAATCCTTTGTATAATCAGATGAAATCAAATAGTCAGGCACTAGGTACCAACATTCAATTTGGTGCTTTTAATAACTCACTTGCATCATCTGATATAAATATATCTGCTACGATTCTGGGGTCTCAGGCATTGGATCCACAAAGAGAAGCTCAACCCAGTCTTGCATCGGCATCTGGTGGTCATAGGGAAAACTGGGGAGAGTCAAATATGGCTGATGGAAGTCCAATGACTGATACTTCAGATGATGACCCAGATGACAAAAATCAAAGGCAGGAAGGGAATAATCAAATGATGGTTGCTGCAGGCTCTGATTCCAGCAACAAATCAAAGGAGAAATCAGGGGATCAAAAGACCTTACGCAGGCTTGCACAAAACCGTGAAGCTGCAAGAAAGAGCCGATTGAGGAAAAAAGCATATGTACAACAGCTAGAAAGCAGCCGATTGAAGCTGACTCAACTTGAGCAGGAGCTCCAACGGGCGCGTCAGCAGGGAATATTCATATCAAGCTCCGGAGATCAGACCCATTCAATGAGTGGAAATGGTGCATTAGTGTTCGATGTAGAGTATACTCGGTGGCTAGAAGAGCATAATAGACAGATAAACGAGCTTAGAGCGGCAGTTAATTCACATGCGGGTGACACTGAGCTTCGGACTATTGTAGACATCGTCACGGCCCAGTTTGATGATATTTTCAGGCTGAAGAGCACTGCCGCTAAAGCTGATGTCTTCCATATCTTGTCTGGAATGTGGAAGACACCAGCTGAACGTTGTTTTATGTGGATTGGTGGCTTCCGATCATCTGAGCTCCTCAAGCTTCTGATGAACCAATTGGAACCTTTAACCGAGCAACAAATCACGGGAATATGCAACTTGCAACAATCGTCCCAGCAAGCTGAAGACGCTCTGTCCCAAGGAATGGAAGCATTGCAGCAATCATTGGCTGAGACATTGGCAAATGGCTCTCCTGGAACATCTGGGTCCAAAGAAAATGTAGCCAACTATATGGGTCAAATGGCCATGGCTATGGGTAAGCTAGGCACTCTCGAGGGCTTCCTACGCCAGGCTGATAATCTTAGACGACAAACGTTACAACAAATGCATCGCATTTTGACAACCAGACAATCTGCCCGAGCACTTCTTGCAATAAACGACTACTTTTCCCGTCTTAGAGCTCTTAGTTCTCTTTGGCTAGCCCGACCAAGAGAATGA 1404 44.87 MGNSRTVKFGLEDVNKLVDEMPSFGSQMPSSNPIGAEGNTVPSFRVSDFRVLEQSLGFRIEDITRNPLYNQMKSNSQALGTNIQFGAFNNSLASSDINISATILGSQALDPQREAQPSLASASGGHRENWGESNMADGSPMTDTSDDDPDDKNQRQEGNNQMMVAAGSDSSNKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGALVFDVEYTRWLEEHNRQINELRAAVNSHAGDTELRTIVDIVTAQFDDIFRLKSTAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLMNQLEPLTEQQITGICNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGTSGSKENVANYMGQMAMAMGKLGTLEGFLRQADNLRRQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 109811 116568 - Conep03aG0001700.1 Cone3ag0017 433476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0017 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0017 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0017 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0017 467 Pfam bZIP transcription factor 182 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0017 467 MobiDBLite consensus disorder prediction 156 172 - -
Cone3ag0017 467 CDD bZIP_HBP1b-like 182 234 - -
Cone3ag0017 467 Coils Coil 201 228 - -
Cone3ag0017 467 Coils Coil 258 278 - -
Cone3ag0017 467 Gene3D - 181 233 - -
Cone3ag0017 467 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone3ag0017 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone3ag0017 467 PANTHER TRANSCRIPTION FACTOR TGA9 144 467 - -
Cone3ag0017 467 MobiDBLite consensus disorder prediction 110 185 - -
Cone3ag0017 467 FunFam BZIP family transcription factor 181 230 - -
Cone3ag0017 467 SMART brlzneu 178 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0832 Cone-Chr1:54142561 Cone3ag0017 Cone-Chr3:109811 2.01E-148 dispersed
Cone3ag0017 Cone-Chr3:109811 Cone5ag0986 Cone-Chr5:4227304 1.56E-169 dispersed
Cone10ag0011 Cone-Chr10:113492 Cone3ag0017 Cone-Chr3:109811 6.85E-276 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45744 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0017 K14431 - csv:101219149 686.797