Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0023 ATGGCCAGGGCCGCATCAGAGTCTGGATTTCATGTTTTGGCCGTCGATGATAGCATCATAGATAGGAGGCTAATTGAGAGGCTCCTCAAAATCTCTTCATTTGAAGTTACTACAGTTGATTCGGGTAACAAGGCATTGAATGAAGAAGATGAACATAGACTTATTGATCCAGAAAATCATCAGGAAGTGGAAGTAAATCTTATTATAACAGATTATTGTATGCCTGGAATGGCAGGCTATGATTTGCTGAAGAAAATCAAGGAATCATCTTCTTTTAGAAACATACCGGTTGTGATCATGTCATCTGAGAATGTCCCTGCAAGGATCAGCAGATGGTTGGAAGAAGGAGCAGAAGAGTTTTTCTTGAAGCCAGTGAAGCTACAAGATGTGAATAGGTTAAAACCCCATATGATGAAAAGCAAAGGAGTGAAGGATGACGATCATGTCCATAAACAAGAAAAGCAAGAAAGAGTAACAGTAGGAAAAGAAAAACACGAACAATTACAGCAGCAGCAATCAAGTAGTAGTAATAATAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAAGAAGAGTAGTACTATAGAAGCCGAGGAGGGAGTTTCATCTGATAGAACAACAAGACCAAGATTCAATGGAATCACTGGATTTGTCATATTAATTGACACAACGAAGATTTTAGTCTTATTTTTTTTATCTTCATCCCTTTTTGTCATATCTCTTTTTGTCATGCTCTCTTCTAATGCCGATGAATACTACAAGCATTAG 783 38.7 MARAASESGFHVLAVDDSIIDRRLIERLLKISSFEVTTVDSGNKALNEEDEHRLIDPENHQEVEVNLIITDYCMPGMAGYDLLKKIKESSSFRNIPVVIMSSENVPARISRWLEEGAEEFFLKPVKLQDVNRLKPHMMKSKGVKDDDHVHKQEKQERVTVGKEKHEQLQQQQSSSSNNNNNNNSSSSSSSSSKRKKSSTIEAEEGVSSDRTTRPRFNGITGFVILIDTTKILVLFFLSSSLFVISLFVMLSSNADEYYKH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 145504 146792 + Conep03aG0002300.1 Cone3ag0023 433482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0023 260 Gene3D - 11 210 - -
Cone3ag0023 260 MobiDBLite consensus disorder prediction 196 210 - -
Cone3ag0023 260 MobiDBLite consensus disorder prediction 139 211 - -
Cone3ag0023 260 Coils Coil 151 171 - -
Cone3ag0023 260 ProSiteProfiles Response regulatory domain profile. 11 138 IPR001789 GO:0000160(InterPro)
Cone3ag0023 260 SMART REC_2 10 137 IPR001789 GO:0000160(InterPro)
Cone3ag0023 260 MobiDBLite consensus disorder prediction 139 164 - -
Cone3ag0023 260 Pfam Response regulator receiver domain 12 129 IPR001789 GO:0000160(InterPro)
Cone3ag0023 260 SUPERFAMILY CheY-like 8 132 IPR011006 -
Cone3ag0023 260 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 207 IPR045279 GO:0009736(InterPro)
Cone3ag0023 260 CDD REC_typeA_ARR 12 133 - -
Cone3ag0023 260 MobiDBLite consensus disorder prediction 165 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0023 Cone-Chr3:145504 Cone7ag0062 Cone-Chr7:273575 3.21E-56 dispersed
Cone13ag0617 Cone-Chr13:6253790 Cone3ag0023 Cone-Chr3:145504 1.58E-67 wgd
Cone19ag0548 Cone-Chr19:4566224 Cone3ag0023 Cone-Chr3:145504 2.61E-66 wgd
Cone19ag0548 Cone-Chr19:4566224 Cone3ag0023 Cone-Chr3:145504 2.61E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45745 PF00204 DNA_gyraseB 1.00E-54 CL0329 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0023 K14492 - rcu:8279885 231.876